Browse Element(s) Details


OsAffx.23702.1.S1_s_at

Description gb:NM_191922.1
DB_XREF= gi:34910927
GEN=OSJNBb0063G05.9
TID=OsAffx.23702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0063G05.9 (OSJNBb0063G05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4767011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47620Os.32834.1.S1_at11/111+27570291..27572893expressed protein
LOC_Os01g47620Os.32834.2.S1_x_at10/111+27570291..27572893expressed protein
LOC_Os01g47630Os.19141.1.S1_at11/111+27573171..27574796expressed protein
LOC_Os01g47630OsAffx.32311.1.S1_x_at3/111+27573171..27574796expressed protein
LOC_Os01g47630Os.48833.1.A1_s_at2/111+27573171..27574796expressed protein
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23702.1.S1_s_at--760--771Chr01:27596551..27596575 (25 bp)
ATGTCCCGCCACAAGAGGAAGCTGT
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--57--1351Chr01:27596493..27596517 (25 bp)
AGAGACGCCACCGTGTAGTACCATC
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--938--10051Chr01:27596478..27596502 (25 bp)
TAGTACCATCATCTCCACCGGAGGA
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--822--6171Chr01:27596326..27596350 (25 bp)
GAGGAGGAGTCCATCGAGCTCAACC
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--198--5911Chr01:27596311..27596335 (25 bp)
GAGCTCAACCCATGGCTGAAGGACA
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--602--8971Chr01:27596295..27596319 (25 bp)
TGAAGGACATCCTGAGGCCGTTCCC
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--155--5411Chr01:27596222..27596246 (25 bp)
GAAGCTGATCGACATGCCGGAGATC
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--1128--9631Chr01:27596199..27596223 (25 bp)
TCAGGGAGTTCATCATGCGCGGGTC
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--264--9951Chr01:27596143..27596167 (25 bp)
TACGAGTGCGATCATCCGGCCATGG
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--628--10851Chr01:27596064..27596088 (25 bp)
TTGGCGATGATCGAGCTCATTACGA
LOC_Os01g47670
OsAffx.23702.1.S1_s_at--1130--3571Chr01:27596047..27596071 (25 bp)
CATTACGATCGGGTGGACGGCCAGC
LOC_Os01g47670
Target Sequence 
ATGTCCCGCCACAAGAGGAAGCTGTCCACCACCGACATCGCCTCACCGCCGCGGCGCCAGAGACGCCACCGTGTAGTACC
ATCATCTCCACCGGAGGAGCCGAACACGTCCCCGTCGCCGGCGGCTGCGCCTCCGGACCAGCAGGAAGGCGGCGACGACG
ACCCCGACCGCGGGAGCATTTCGTGGTGGCTGCGGAGGGTGTTCGGCCTGACCGCCACCTTTACCGAGGAGGAGTCCATC
GAGCTCAACCCATGGCTGAAGGACATCCTGAGGCCGTTCCCGCCTCCCTTGCCGCCGACGCCGCCGCCTCCATGCCCGAG
CCCTCGCCGGAAGCTGATCGACATGCCGGAGATCAGGGAGTTCATCATGCGCGGGTCGTACCTCGGCGGTGGCCCTGCAC
CTCCGCGCTACGAGTGCGATCATCCGGCCATGGTGATGACCGGCGGCGATGATCAGCAGCAGCTCGATGAGCAGCGCAGA
GACGATGTTGGCGATGATCGAGCTCATTACGATCGGGTGGACGGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23702.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis