Browse Element(s) Details


Os.8765.1.S1_a_at

Description gb:AK067930.1
DB_XREF= gi:32977948
TID=Os.8765.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glyoxalase II (OSJNBb0063G05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127E08, full insert sequence.
FL= gb:AK067930.1 gb:AK104104.1 gb:AK104749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4769010/11Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47650Os.45930.1.A1_at7/111+27584296..27593009vacuoleless1, putative, expressed
LOC_Os01g47660Os.9361.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660Os.9361.1.S1_s_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47660OsAffx.23701.1.S1_at11/111+27593438..2759530160S ribosomal protein L18a, putative, expressed
LOC_Os01g47670OsAffx.23702.1.S1_s_at11/111+27596015..27597223expressed protein
LOC_Os01g47670OsAffx.28696.1.S1_x_at1/111+27596015..27597223expressed protein
LOC_Os01g47680OsAffx.11509.1.S1_at11/111+27598232..27600753expressed protein
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019243biological_processmethylglyoxal catabolism to D-lactate
GO:0005737cellular_componentcytoplasm
GO:0004416molecular_functionhydroxyacylglutathione hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8765.1.S1_a_at--545--10731NONE
TTGAGGTACGATCTACTCCTGGCCA
NONE
Os.8765.1.S1_a_at--1155--9111Chr01:27602843..27602867 (25 bp)
TGCTGGCTGTGTGACTTATGTAACA
LOC_Os01g47690
Os.8765.1.S1_a_at--275--2951Chr01:27602814..27602838 (25 bp)
AAGGCGATGATCAACCTTCACCAAG
LOC_Os01g47690
Os.8765.1.S1_a_at--522--4891Chr01:27602785..27602809 (25 bp)
GCTTTTACTGGTGATGCCTTGCTTA
LOC_Os01g47690
Os.8765.1.S1_a_at--209--4451Chr01:27602770..27602794 (25 bp)
GCCTTGCTTATACGTGCATGTGGAA
LOC_Os01g47690
Os.8765.1.S1_a_at--502--71Chr01:27602305..27602329 (25 bp)
ATTGCCAAAGGATACCCTGCTTTAT
LOC_Os01g47690
Os.8765.1.S1_a_at--1078--3831Chr01:27602289..27602313 (25 bp)
CTGCTTTATCCTGGCCATGACTACA
LOC_Os01g47690
Os.8765.1.S1_a_at--455--7911Chr01:27602167..27602191 (25 bp)
GGTTGCGTATAATGCTCGACTAACA
LOC_Os01g47690
Os.8765.1.S1_a_at--69--1311Chr01:27601826..27601850 (25 bp)
AGATGATCGATGTAGCCGTGCCCGC
LOC_Os01g47690
Os.8765.1.S1_a_at--986--4211Chr01:27601805..27601829 (25 bp)
CCGCGAATTTGCTCTGCGGTATTCA
LOC_Os01g47690
Os.8765.1.S1_a_at--874--9131Chr01:27601791..27601815 (25 bp)
TGCGGTATTCAGGATCCTCCACCAT
LOC_Os01g47690
Target Sequence 
TTGAGGTACGATCTACTCCTGGCCATACTGCTGGCTGTGTGACTTATGTAACAGGTGAAGGCGATGATCAACCTTCACCA
AGAATGGCTTTTACTGGTGATGCCTTGCTTATACGTGCATGTGGAAGGACAGACTTTCAGGGAGGAAGTTCTGATGAGCT
GTATGAGTCGGTGCATTCGCAGATTTTCACATTGCCAAAGGATACCCTGCTTTATCCTGGCCATGACTACAAAGGTTTCA
CAGTAAGTACTGTTGAAGAGGAGGTTGCGTATAATGCTCGACTAACAAAGGATAAGGAAACATTCAAGAAAATTATGGAC
AACTTGAACTTGGCCTATCCAAAGATGATCGATGTAGCCGTGCCCGCGAATTTGCTCTGCGGTATTCAGGATCCTCCACC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8765.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis