Browse Element(s) Details


Os.41776.1.S1_at

Description gb:AK111561.1
DB_XREF= gi:37988224
TID=Os.41776.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OSJNBb0063G05.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063J15, full insert sequence.
FL= gb:AK111561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4773011/11Ras-related protein Rab11B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41776.1.S1_at--545--8451Chr01:27628791..27629213 (25 bp)
GGCCAAGAGAGGTACCGCGCCATCA
LOC_Os01g47730
Os.41776.1.S1_at--896--7631Chr01:27629423..27629447 (25 bp)
GGGACCTTCTCCATGGAGACGTCGG
LOC_Os01g47730
Os.41776.1.S1_at--381--5851Chr01:27629566..27629590 (25 bp)
GACCATCGACGTCAGCGCCAAGGAT
LOC_Os01g47730
Os.41776.1.S1_at--1101--1571Chr01:27629612..27629636 (25 bp)
AGCTCAGGGTGCTGCTCGTCTTGAC
LOC_Os01g47730
Os.41776.1.S1_at--374--9411Chr01:27629627..27629651 (25 bp)
TCGTCTTGACTTTGACTCGCTCAAA
LOC_Os01g47730
Os.41776.1.S1_at--1063--10751Chr01:27629638..27629662 (25 bp)
TTGACTCGCTCAAACTCATCGTCGT
LOC_Os01g47730
Os.41776.1.S1_at--145--3551Chr01:27629654..27629678 (25 bp)
CATCGTCGTCGAGCTATGCAAATTG
LOC_Os01g47730
Os.41776.1.S1_at--1006--651Chr01:27629669..27629693 (25 bp)
ATGCAAATTGCCACCGTTCACAGCT
LOC_Os01g47730
Os.41776.1.S1_at--712--6751Chr01:27629684..27629708 (25 bp)
GTTCACAGCTTTGTTTATACCGTGT
LOC_Os01g47730
Os.41776.1.S1_at--67--10431Chr01:27629698..27629722 (25 bp)
TTATACCGTGTGTTTTCGTCACTGC
LOC_Os01g47730
Os.41776.1.S1_at--123--9411Chr01:27629713..27629737 (25 bp)
TCGTCACTGCTGATTGATACTACAA
LOC_Os01g47730
Target Sequence 
GGCCAAGAGAGGTACCGCGCCATCACGAGCGCCTACTACCGCGGCGCGGTGGGCGCGCTGGTGGTGTACGACGTGACGCG
CCGCATCACGTTCGAGAACGCGGAGCGGTGGCTCAAGGAGCTCCGCGACCACACGGACGCCAACATCGTCGTCATGCTCG
TGGGCAACAAGGCCGACCTGCGCCACCTCCGCGCCGTCCCCGCGGAGGACGCCAGGGCGTTCGCCGAGGCGCACGGGACC
TTCTCCATGGAGACGTCGGCGCTGGAGGCCACCAACGTGGAGGGCGCCTTCACCGAGGTGCTCGCGCAGATCTACCGCGT
CGTCAGCCGGAACGCGCTCGACATCGGCGACGACCCCGCCGCGCCGCCCCGGGGGCGGACCATCGACGTCAGCGCCAAGG
ATGACGCCGTCACCCCCGTGAACAGCTCAGGGTGCTGCTCGTCTTGACTTTGACTCGCTCAAACTCATCGTCGTCGAGCT
ATGCAAATTGCCACCGTTCACAGCTTTGTTTATACCGTGTGTTTTCGTCACTGCTGATTGATACTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis