Browse Element(s) Details


Os.11657.1.S1_at

Description gb:AK105335.1
DB_XREF= gi:32990544
TID=Os.11657.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.17 (OSJNBb0063G05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E04, full insert sequence.
FL= gb:AK105335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4776011/11glutaredoxin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed
LOC_Os01g47780Os.5908.1.S1_at11/111+27667758..27668798Fasciclin domain containing protein, expressed
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009735biological_processresponse to cytokinin stimulus
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11657.1.S1_at--556--7291Chr01:27653280..27653304 (25 bp)
GTGCCCTCTGGCTTTAAATCACCAT
LOC_Os01g47760
Os.11657.1.S1_at--841--10511Chr01:27653217..27653241 (25 bp)
TTCACAACATCGTGCCATCGTGGTT
LOC_Os01g47760
Os.11657.1.S1_at--714--491Chr01:27653201..27653225 (25 bp)
ATCGTGGTTCAATCCTGGCCGTTGG
LOC_Os01g47760
Os.11657.1.S1_at--1071--10831Chr01:27653180..27653204 (25 bp)
TTGGATTCGGTTTTACATCGCGGCG
LOC_Os01g47760
Os.11657.1.S1_at--811--531Chr01:27653164..27653188 (25 bp)
ATCGCGGCGGATTTCCTCTAGGATA
LOC_Os01g47760
Os.11657.1.S1_at--302--3751Chr01:27653149..27653173 (25 bp)
CTCTAGGATATTTTTCCTCCTCCTT
LOC_Os01g47760
Os.11657.1.S1_at--18--9251Chr01:27653129..27653153 (25 bp)
TCCTTTTCCGTAGGGTGTGCTAAGC
LOC_Os01g47760
Os.11657.1.S1_at--409--3111Chr01:27653036..27653060 (25 bp)
AATATATCTTCGTGCGTGCGTACGT
LOC_Os01g47760
Os.11657.1.S1_at--784--10191Chr01:27653002..27653026 (25 bp)
TATTTTACTCCCCACCATGTGAATA
LOC_Os01g47760
Os.11657.1.S1_at--293--7372Chr02:29583741..29583979 (25 bp)
GTGACATTTGCCACATCTGTACAGT
NONE
Os.11657.1.S1_at--651--5951Chr01:27652905..27652929 (25 bp)
GAGAATGAGACGTTCATTTTGCCCC
LOC_Os01g47760
Target Sequence 
GTGCCCTCTGGCTTTAAATCACCATCATCTTCCTTCTCTCCTTCCAATTTTTTTCTTCCTTTCTTCACAACATCGTGCCA
TCGTGGTTCAATCCTGGCCGTTGGATTCGGTTTTACATCGCGGCGGATTTCCTCTAGGATATTTTTCCTCCTCCTTTTCC
GTAGGGTGTGCTAAGCTTTGAGAAAAAGAACCAGAGAGAGCTAAAGCTAATGTTGCTAGTTAATAGTAGTAATTCATTTA
GCAAAATATATCTTCGTGCGTGCGTACGTGATGATGAGTATTTTACTCCCCACCATGTGAATACGGAGCGAGAGAGGAAG
AGGGACAGTGACATTTGCCACATCTGTACAGTTTTGCATTTCTGAATTAATTAATGAGAATGAGACGTTCATTTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis