Browse Element(s) Details


OsAffx.21516.2.S1_at

Description tigr:9629.m04582
TID=OsAffx.21516.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4772011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47690Os.8765.1.S1_a_at10/111+27601570..27605404Hydroxyacylglutathione hydrolase 3, mitochondrial precursor, putative, expressed
LOC_Os01g47700NANA1+27608163..27608838expressed protein
LOC_Os01g47710Os.36185.1.S1_at11/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_x_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47710Os.36185.2.S1_at10/111+27615611..27619511Homeobox domain containing protein, expressed
LOC_Os01g47720OsAffx.21516.2.S1_at11/111+27626870..27627196hypothetical protein
LOC_Os01g47730Os.41776.1.S1_at11/111+27628289..27629770Ras-related protein Rab11B, putative, expressed
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21516.2.S1_at--168--7771Chr01:27627139..27627163 (25 bp)
GGTGACAAGCAGGAGGCCGGGCTTA
LOC_Os01g47720
OsAffx.21516.2.S1_at--313--2931Chr01:27627002..27627026 (25 bp)
AAGGCAACCGCACAGGTCGGCAGTG
LOC_Os01g47720
OsAffx.21516.2.S1_at--744--2611Chr01:27626997..27627021 (25 bp)
AACCGCACAGGTCGGCAGTGGTGGC
LOC_Os01g47720
OsAffx.21516.2.S1_at--774--5811Chr01:27626969..27626993 (25 bp)
GACCGCTAGGGCAGGGCGCCATCCT
LOC_Os01g47720
OsAffx.21516.2.S1_at--1094--3751Chr01:27626946..27626970 (25 bp)
CTCTTCAACCTCCTACCTTGATGGA
LOC_Os01g47720
OsAffx.21516.2.S1_at--722--10491Chr01:27626943..27626967 (25 bp)
TTCAACCTCCTACCTTGATGGACCT
LOC_Os01g47720
OsAffx.21516.2.S1_at--1063--2611Chr01:27626940..27626964 (25 bp)
AACCTCCTACCTTGATGGACCTCAA
LOC_Os01g47720
OsAffx.21516.2.S1_at--859--3792Chr06:26901715..26901854 (25 bp)
CTCCTACCTTGATGGACCTCAATAG
NONE
OsAffx.21516.2.S1_at--1046--9971Chr01:27626933..27626957 (25 bp)
TACCTTGATGGACCTCAATAGCAGT
LOC_Os01g47720
OsAffx.21516.2.S1_at--338--6231Chr01:27626927..27626951 (25 bp)
GATGGACCTCAATAGCAGTGACCGT
LOC_Os01g47720
OsAffx.21516.2.S1_at--281--8531Chr01:27626925..27626949 (25 bp)
TGGACCTCAATAGCAGTGACCGTGG
LOC_Os01g47720
Target Sequence 
GGTGACAAGCAGGAGGCCGGGCTTAGGAGGAGCGGCGAGAGAGCGGATGAGGCTGAGAAGAATGAGGGAGGAGCGAAGGA
TACTGAGAGGGGAAAGAAGGAGCGGTGGGGGTCGGGTGGAGGAGGAGCAGTTGGAGCAAGGCAACCGCACAGGTCGGCAG
TGGTGGCGGTGACCGCTAGGGCAGGGCGCCATCCTCTTCAACCTCCTACCTTGATGGACCTCAATAGCAGTGACCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21516.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis