Browse Element(s) Details


Os.11171.1.S1_s_at

Description gb:AK103612.1
DB_XREF= gi:32988821
TID=Os.11171.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435B05.20 (P0435B05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133K04, full insert sequence.
FL= gb:AK105380.1 gb:AK103612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5492011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11171.1.S1_s_at--252--6291Chr01:31914344..31914364 (21 bp)
GATGAGTCTGAAGGGAAGGCTAAAC
LOC_Os01g54920
Os.11171.1.S1_s_at--466--8031Chr01:31914243..31914351 (25 bp)
GGAAGGCTAAACATAAAGGAACTGA
LOC_Os01g54920
Os.11171.1.S1_s_at--535--7811Chr01:31914217..31914241 (25 bp)
GGTCTTATTCAGATTGAAAACCCGA
LOC_Os01g54920
Os.11171.1.S1_s_at--741--8951Chr01:31914203..31914227 (25 bp)
TGAAAACCCGAACTTAGTGAAAGCA
LOC_Os01g54920
Os.11171.1.S1_s_at--510--2931Chr01:31914008..31914187 (25 bp)
AAGGAAGTTGATCTCGGAAAGACAA
LOC_Os01g54920
Os.11171.1.S1_s_at--249--9451Chr01:31913995..31914019 (25 bp)
TCGGAAAGACAACTGAGCTCTCGAG
LOC_Os01g54920
Os.11171.1.S1_s_at--819--5611Chr01:31913988..31914012 (25 bp)
GACAACTGAGCTCTCGAGGCGTGAA
LOC_Os01g54920
Os.11171.1.S1_s_at--1077--2551Chr01:31913986..31914009 (24 bp)
AACTGAGCTCTCGAGGCGTGAAAGA
LOC_Os01g54920
Os.11171.1.S1_s_at--86--1591Chr01:31913852..31913876 (25 bp)
AGCTCATGAGCGCTATATGAAGCTT
LOC_Os01g54920
Os.11171.1.S1_s_at--420--2672Chr03:35480353..35480430 (24 bp)
AAGCTTCAGGAGCAAGGAAAAACAG
NONE
Os.11171.1.S1_s_at--1067--1251Chr01:31913041..31913543 (25 bp)
AGATTTGGAACGTCTTGCTTTAATA
LOC_Os01g54920
Target Sequence 
GATGAGTCTGAAGGGAAGGCTAAACATAAAGGAACTGAAGGTCTTATTCAGATTGAAAACCCGAACTTAGTGAAAGCAAA
GAATATAAAAGCCAAGGAAGTTGATCTCGGAAAGACAACTGAGCTCTCGAGGCGTGAAAGAGAGGAGATCGAGAAACAGA
AAGCTCATGAGCGCTATATGAAGCTTCAGGAGCAAGGAAAAACAGAACAAGCTAGGAAAGATTTGGAACGTCTTGCTTTA
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11171.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis