Browse Element(s) Details


OsAffx.21615.2.S1_at

Description tigr:9629.m05360
TID=OsAffx.21615.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY072613 At1g28510F3M18_5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5495011/11Optic atrophy 3 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21615.2.S1_at--420--4551Chr01:31932849..31932870 (22 bp)
GCCCAGGTAAACCATCGTTTCACTA
LOC_Os01g54950
OsAffx.21615.2.S1_at--1106--2011Chr01:31932828..31932852 (25 bp)
ACTACAAACATGCAGAGGCGGCTTT
LOC_Os01g54950
OsAffx.21615.2.S1_at--965--8291Chr01:31932809..31932833 (25 bp)
GGCTTTATGGCCGTGCAACTGACAT
LOC_Os01g54950
OsAffx.21615.2.S1_at--278--7351Chr01:31932797..31932821 (25 bp)
GTGCAACTGACATTCACATTCGGCC
LOC_Os01g54950
OsAffx.21615.2.S1_at--949--2071Chr01:31932782..31932806 (25 bp)
ACATTCGGCCCCTGAATGAGGAGAA
LOC_Os01g54950
OsAffx.21615.2.S1_at--229--5311Chr01:31932760..31932784 (25 bp)
GAAGGCAATTCAAGCTGCCGCAGAT
LOC_Os01g54950
OsAffx.21615.2.S1_at--800--4771Chr01:31932747..31932771 (25 bp)
GCTGCCGCAGATCTTCTTGGTGAAC
LOC_Os01g54950
OsAffx.21615.2.S1_at--916--8231Chr01:31932620..31932733 (25 bp)
GGCAAAGCCTGAAAACTGGTTCTTC
LOC_Os01g54950
OsAffx.21615.2.S1_at--45--1951Chr01:31932606..31932630 (25 bp)
ACTGGTTCTTCCAGAATTCTTATTT
LOC_Os01g54950
OsAffx.21615.2.S1_at--602--171Chr01:31932585..31932609 (25 bp)
ATTTTTCTCTAACTTCCTATGCTCG
LOC_Os01g54950
OsAffx.21615.2.S1_at--594--611Chr01:31932511..31932591 (25 bp)
ATGCTCGAGAAGTCGCTGGTACTGC
LOC_Os01g54950
Target Sequence 
GCCCAGGTAAACCATCGTTTCACTACAAACATGCAGAGGCGGCTTTATGGCCGTGCAACTGACATTCACATTCGGCCCCT
GAATGAGGAGAAGGCAATTCAAGCTGCCGCAGATCTTCTTGGTGAACTATTTGTTTTCTCGGCAAAGCCTGAAAACTGGT
TCTTCCAGAATTCTTATTTTTCTCTAACTTCCTATGCTCGAGAAGTCGCTGGTACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21615.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis