Browse Element(s) Details


Os.34249.1.S1_at

Description gb:AK072330.1
DB_XREF= gi:32982353
TID=Os.34249.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative auxin response transcription factor (P0435B05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039P13, full insert sequence.
FL= gb:AK072330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g549907/11Auxin response factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34249.1.S1_at--87--3971Chr01:31944651..31944675 (25 bp)
CGGATGCTAGACTTGTTTGGGTACA
LOC_Os01g54990
Os.34249.1.S1_at--415--9851Chr01:31944630..31944654 (25 bp)
TACAATTGCAGTACGCCTGGTGCTC
LOC_Os01g54990
Os.34249.1.S1_at--626--10251Chr01:31944596..31944620 (25 bp)
TTTGTGCTGCTCCTTTGGGAATATG
LOC_Os01g54990
Os.34249.1.S1_at--614--7611Chr01:31944580..31944604 (25 bp)
GGGAATATGATGCTACTTGAGTAAC
LOC_Os01g54990
Os.34249.1.S1_at--1106--6331Chr01:31944357..31944381 (25 bp)
GATGCTTTGCATGTAGGTATTGCTG
LOC_Os01g54990
Os.34249.1.S1_at--90--1831Chr01:31944328..31944352 (25 bp)
ACGCCTGAATACCTACGTGCGGTCA
LOC_Os01g54990
Os.34249.1.S1_at--112--3551Chr01:31944216..31944240 (25 bp)
CATCGGCACCCTGTTTATGCAGAAA
LOC_Os01g54990
Os.34249.1.S1_at--979--6412Chr01:31943913..31943937 (25 bp)
GATCTAGACCTAGTTATGAGCCTAT
NONE
Os.34249.1.S1_at--410--5872Chr01:31943896..31943920 (25 bp)
GAGCCTATTTCAGAAGTGCTATGTA
NONE
Os.34249.1.S1_at--234--6931Chr01:31943874..31943898 (25 bp)
GTATGGTTTGCTTGTCAACATTTGT
NONE
Os.34249.1.S1_at--409--3271Chr01:31943859..31943883 (25 bp)
CAACATTTGTTTCTGTATCGGTACA
NONE
Target Sequence 
CGGATGCTAGACTTGTTTGGGTACAATTGCAGTACGCCTGGTGCTCTTCANGCCCTTTGTGCTGCTCCTTTGGGAATATG
ATGCTACTTGAGTAACTGGGAGGGATACGTACATGTGGAGACGCAGCCACTCCACGCTTCATCCCAGATGTAAACGGCAT
CGGTCTGGTTATGGTCCCACCGTTCCTGATGCTTTGCATGTAGGTATTGCTGNCTCACGCCTGAATACCTACGTGCGGTC
AGGCGNATAAAGCGACTCGATTGTATGTTTGACTGCNGCTCTAGCTGTCGAGTCGGAAGGGCGATGATGTTNATCGTCGT
TAATGTACCATCGGCACCCTGTTTATGCAGAAATGTNGACCTAATTATTATGAACNTATTTCCTTAGTTCTATGTATGGT
TAGCTTCNGATCTAGACCTAGTTATGAGCCTATTTCAGAAGTGCTATGTATGGTTTGCTTGTCAACATTTGTTTCTGTAT
CGGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis