Browse Element(s) Details


Os.24889.2.S1_x_at

Description gb:AK099782.1
DB_XREF= gi:32984991
TID=Os.24889.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucan synthase (P0503C12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full insert sequence.
FL= gb:AK099782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5504011/11callose synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein
LOC_Os01g55060NANA1+31986369..31986638hypothetical protein
LOC_Os01g55070OsAffx.23796.2.S1_at11/111+31988938..31990929pentatricopeptide, putative, expressed
LOC_Os01g55080NANA1+31996576..31996863hypothetical protein
LOC_Os01g55090NANA1+31999045..32003204transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24889.2.S1_x_at--884--8951Chr01:31969878..31969902 (25 bp)
TGACATCTTCACAAGCCTTTTGGCA
LOC_Os01g55040
Os.24889.2.S1_x_at--481--10871Chr01:31969859..31969883 (25 bp)
TTGGCATTCATTCCTACTGGTTGGG
LOC_Os01g55040
Os.24889.2.S1_x_at--1077--11Chr01:31969799..31969823 (25 bp)
ATTGAGTCTACTGTGGTCTGGGCCA
LOC_Os01g55040
Os.24889.2.S1_x_at--590--10791Chr01:31969729..31969753 (25 bp)
TTGTTATGGCGCCAGTTGCATTCTT
LOC_Os01g55040
Os.24889.2.S1_x_at--1082--5391Chr01:31969655..31969679 (25 bp)
GAAGCTTTCAGCAGAGGCCTCCAGA
LOC_Os01g55040
Os.24889.2.S1_x_at--745--251Chr01:31969631..31969655 (25 bp)
ATATCCCGCATTCTTGCTGGCAAGA
LOC_Os01g55040
Os.24889.2.S1_x_at--830--2891Chr01:31968582..31968606 (25 bp)
AAGGTTATCGCAGTTAGGCCGTCCT
LOC_Os01g55040
Os.24889.2.S1_x_at--236--6551Chr01:31968468..31968492 (25 bp)
GATTAGCTTCAGTCATCTTACTCTA
LOC_Os01g55040
Os.24889.2.S1_x_at--819--9731Chr01:31968422..31968446 (25 bp)
TAATTTAGGCCTCTCCAGTTTTGCA
LOC_Os01g55040
Os.24889.2.S1_x_at--554--1211Chr01:31968406..31968430 (25 bp)
AGTTTTGCACCTTCTTAGAGCTAGT
LOC_Os01g55040
Os.24889.2.S1_x_at--239--10471Chr01:31968355..31968379 (25 bp)
TTACCCGTGAACTCTAATGGCTTGT
LOC_Os01g55040
Target Sequence 
TGACATCTTCACAAGCCTTTTGGCATTCATTCCTACTGGTTGGGGCTTGATTTCCATTGCTCAAGTGATTAGACCATTCA
TTGAGTCTACTGTGGTCTGGGCCAGTGTTGTTTCTGTGGCACGTTTGTATGAGATACTGCTTGGGGTGTTTGTTATGGCG
CCAGTTGCATTCTTTTCCTGGTTGCCTGGATTTCAGGAAATGCAGACGAGGGTACTTTTCAATGAAGCTTTCAGCAGAGG
CCTCCAGATATCCCGCATTCTTGCTGGCAAGAAAACAATTGCAGTTTGAGGCTCTAACAAGGTTATCGCAGTTAGGCCGT
CCTCCGTCACCTCTGTACAGCTTCTTATGCAATGTGGAAGGCTTTCTGTTTACTGATATAGCTTAGATCCATATTGAACC
TTTTAGATGGCTGATTAGCTTCAGTCATCTTACTCTAGATGTTCAGATTTGTACTGAGTAATTTAGGCCTCTCCAGTTTT
GCACCTTCTTAGAGCTAGTTGTATGTAGATGATTCTGTTGCAGCATTACCCGTGAACTCTAATGGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24889.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis