Browse Element(s) Details


Os.10963.1.S1_at

Description gb:AK067551.1
DB_XREF= gi:32977569
TID=Os.10963.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108H01, full insert sequence.
FL= gb:AK058239.1 gb:AK067551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5503011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein
LOC_Os01g55060NANA1+31986369..31986638hypothetical protein
LOC_Os01g55070OsAffx.23796.2.S1_at11/111+31988938..31990929pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10963.1.S1_at--23--511Chr01:31965804..31965828 (25 bp)
ATCGTGTTGGTTTCGTTGTTATTCA
LOC_Os01g55030
Os.10963.1.S1_at--394--1251Chr01:31965683..31965707 (25 bp)
AGTTGGTCTGAACTGCTTCATGTCC
LOC_Os01g55030
Os.10963.1.S1_at--843--771Chr01:31965664..31965688 (25 bp)
ATGTCCTCCTATCGAGCATTTCTAT
LOC_Os01g55030
Os.10963.1.S1_at--615--751Chr01:31965641..31965665 (25 bp)
ATGTACGGATGGGTATTAGCCTATT
LOC_Os01g55030
Os.10963.1.S1_at--125--9991Chr01:31965625..31965649 (25 bp)
TAGCCTATTAGGTGCTGCAGCAGTT
LOC_Os01g55030
Os.10963.1.S1_at--788--6291Chr01:31965573..31965597 (25 bp)
GATGATCAGTCAATTTGCTGCTGCA
LOC_Os01g55030
Os.10963.1.S1_at--175--4771Chr01:31965557..31965581 (25 bp)
GCTGCTGCATTTTGAGCCTCTAAAA
LOC_Os01g55030
Os.10963.1.S1_at--783--3171Chr01:31965511..31965535 (25 bp)
AATTGTCTGCAGTGCTTCTGATTCG
LOC_Os01g55030
Os.10963.1.S1_at--446--7331Chr01:31965500..31965524 (25 bp)
GTGCTTCTGATTCGAACCGTAGTAA
LOC_Os01g55030
Os.10963.1.S1_at--1070--431Chr01:31965476..31965500 (25 bp)
ATCTTATGTTTGAACCTCTGGTCCA
LOC_Os01g55030
Os.10963.1.S1_at--478--5431Chr01:31965465..31965489 (25 bp)
GAACCTCTGGTCCATATGGGCAAAA
LOC_Os01g55030
Target Sequence 
ATCGTGTTGGTTTCGTTGTTATTCAGAAGTTATGTGTTCCAAGCCTATTTGGTCAAATTCTACCTTTTGAGTTGGCTCAA
GAAAGTGAAAGATGAAGGAGATTCTGAGGTTAGGTTGTAGCAGTTGGTCTGAACTGCTTCATGTCCTCCTATCGAGCATT
TCTATGTACGGATGGGTATTAGCCTATTAGGTGCTGCAGCAGTTGTGGTTGTAAGAACAAATGTGATGTGAGATGATCAG
TCAATTTGCTGCTGCATTTTGAGCCTCTAAAAGGATATGATTTCTAGGAGATAAATTGTCTGCAGTGCTTCTGATTCGAA
CCGTAGTAATCTTATGTTTGAACCTCTGGTCCATATGGGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis