Browse Element(s) Details


Os.36306.1.S1_at

Description gb:AK063730.1
DB_XREF= gi:32973748
TID=Os.36306.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435B05.30 (P0435B05.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E05, full insert sequence.
FL= gb:AK063730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5502010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein
LOC_Os01g55060NANA1+31986369..31986638hypothetical protein
LOC_Os01g55070OsAffx.23796.2.S1_at11/111+31988938..31990929pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36306.1.S1_at--604--8491NONE
TGGCTCTCCGAAGCTGGCAATGATG
NONE
Os.36306.1.S1_at--935--5751Chr01:31964314..31964338 (25 bp)
GACGTGTGACAAACTCTAGGTGGAA
LOC_Os01g55020
Os.36306.1.S1_at--455--751Chr01:31964338..31964362 (25 bp)
ATGTAGCAGATTATAGTCCCGTCAA
LOC_Os01g55020
Os.36306.1.S1_at--632--7231Chr01:31964353..31964377 (25 bp)
GTCCCGTCAACTCAAATCTACAGGT
LOC_Os01g55020
Os.36306.1.S1_at--734--3271Chr01:31964370..31964394 (25 bp)
CTACAGGTCTGGCAAGGTTTTAAGG
LOC_Os01g55020
Os.36306.1.S1_at--590--6711Chr01:31964426..31964450 (25 bp)
GTTCTATTAATTTTCCTGCCATGGT
LOC_Os01g55020
Os.36306.1.S1_at--464--5771Chr01:31964479..31964498 (20 bp)
GACGTATATAAATCTCTGCCAGGGT
LOC_Os01g55020
Os.36306.1.S1_at--839--9171Chr01:31964490..31964514 (25 bp)
TGCCAGGGTACTTGTTTCTCCTTTT
LOC_Os01g55020
Os.36306.1.S1_at--645--6732Chr01:31964544..31964568 (25 bp)
GTTCTTTGTGATCATTCGGGACCAT
LOC_Os01g55020
Os.36306.1.S1_at--420--5851Chr01:31964563..31964587 (25 bp)
GACCATGCTATTCGATGTCCTTGGA
LOC_Os01g55020
Os.36306.1.S1_at--437--8711Chr01:31964578..31964602 (25 bp)
TGTCCTTGGACCTTACCTAATGATG
LOC_Os01g55020
Target Sequence 
TGGCTCTCCGAAGCTGGCAATGATGACGTGTGACAAACTCTAGGTGGAATGTAGCAGATTATAGTCCCGTCAACTCAAAT
CTACAGGTCTGGCAAGGTTTTAAGGAGCATCCATGTTAGCATATATTCATAGTCATGTTCTATTAATTTTCCTGCCATGG
TTTGCACAAAAAATGAAAGATGAAGACGTATATAAATCTCTGCCAGGGTACTTGTTTCTCCTTTTAATTAACTAGGAACT
ACATGATTATGTTTGTTCTTTGTGATCATTCGGGACCATGCTATTCGATGTCCTTGGACCTTACCTAATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis