Browse Element(s) Details


OsAffx.23796.2.S1_at

Description tigr:9629.m05374
TID=OsAffx.23796.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5507011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein
LOC_Os01g55060NANA1+31986369..31986638hypothetical protein
LOC_Os01g55070OsAffx.23796.2.S1_at11/111+31988938..31990929pentatricopeptide, putative, expressed
LOC_Os01g55080NANA1+31996576..31996863hypothetical protein
LOC_Os01g55090NANA1+31999045..32003204transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23796.2.S1_at--713--291Chr01:31989452..31989476 (25 bp)
ATAGCCTTGTTCTTGGTAGGTTGCT
LOC_Os01g55070
OsAffx.23796.2.S1_at--676--6931Chr01:31989437..31989461 (25 bp)
GTAGGTTGCTTCATGGGCTTATCAT
LOC_Os01g55070
OsAffx.23796.2.S1_at--77--7591Chr01:31989423..31989447 (25 bp)
GGGCTTATCATCAAGACCAATTCTG
LOC_Os01g55070
OsAffx.23796.2.S1_at--1071--7831Chr01:31989187..31989211 (25 bp)
GGTAGCAATTACAGCAGTCCTTTCA
LOC_Os01g55070
OsAffx.23796.2.S1_at--440--1131Chr01:31989172..31989196 (25 bp)
AGTCCTTTCAGCTTGTAGGCATGGT
LOC_Os01g55070
OsAffx.23796.2.S1_at--692--7171Chr01:31989106..31989130 (25 bp)
GTCTGAATATTCAATCGAGCCTGAG
LOC_Os01g55070
OsAffx.23796.2.S1_at--344--8131Chr01:31989058..31989082 (25 bp)
GGACATGCTATGCAAGTGTGGTCAT
LOC_Os01g55070
OsAffx.23796.2.S1_at--152--6551Chr01:31989013..31989037 (25 bp)
GATTAGAGGCATGCCATTCCAACCA
LOC_Os01g55070
OsAffx.23796.2.S1_at--1042--3571Chr01:31988999..31989023 (25 bp)
CATTCCAACCAAGTGCTGTCGTATG
LOC_Os01g55070
OsAffx.23796.2.S1_at--713--8711Chr01:31988983..31989007 (25 bp)
TGTCGTATGGCGCACATTCCTCCAA
LOC_Os01g55070
OsAffx.23796.2.S1_at--469--91Chr01:31988968..31988992 (25 bp)
ATTCCTCCAAGGTTGCCAGACATAC
LOC_Os01g55070
Target Sequence 
ATAGCCTTGTTCTTGGTAGGTTGCTTCATGGGCTTATCATCAAGACCAATTCTGGTTGCTTAGATACTTATGTTCATAAT
ATGTTGCTAGATATGTATGCTAAGTGCGGTAGAATTGAAGAATGTCTGAAAGCCTTTAAGGAAATGGAAGATAGGAACAT
TATCTCCTGGACAGCTATAATTTCTGGCCTTGCACTTAATGGTTTTTCTCGTAAGGCCCTGGCATGGTTTAAAGCCATGG
AAGAGGATGGCTTCAAACCTGACAAGGTAGCAATTACAGCAGTCCTTTCAGCTTGTAGGCATGGTGGACTGGTGCATGAA
GGAATGAATATATTCAGACATATGAAGTCTGAATATTCAATCGAGCCTGAGATGGAGCATTACATTTGTGTGGTGGACAT
GCTATGCAAGTGTGGTCATTTGAAGGAAGCTGAGGTTGTGATTAGAGGCATGCCATTCCAACCAAGTGCTGTCGTATGGC
GCACATTCCTCCAAGGTTGCCAGACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23796.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis