Browse Element(s) Details


Os.18072.1.S1_x_at

Description gb:NM_191259.1
DB_XREF= gi:34909601
GEN=P0435B05.21
TID=Os.18072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435B05.21 (P0435B05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0435B05.21 (P0435B05.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5493011/11expressed protein
LOC_Os05g439501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein
LOC_Os01g54940Os.22713.1.S1_at11/111+31926025..31931427oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g54950OsAffx.21615.2.S1_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54950OsAffx.21615.1.S1_s_at11/111+31932135..31934510Optic atrophy 3 protein containing protein, expressed
LOC_Os01g54960Os.6109.1.S1_at11/111+31934925..31936559expressed protein
LOC_Os01g54980Os.29067.2.S1_at11/111+31939643..31941491expressed protein
LOC_Os01g54990Os.34249.2.S1_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.2.S1_x_at11/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.34249.1.S1_at7/111+31944035..31950053Auxin response factor 3, putative, expressed
LOC_Os01g54990Os.53022.1.S1_at1/111+31944035..31950053Auxin response factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18072.1.S1_x_at--818--1331Chr01:31919987..31920011 (25 bp)
AGAGAGTGGCTGTTCTTTGACAAGC
LOC_Os01g54930
Os.18072.1.S1_x_at--699--2792Chr05:25495618..25495642 (25 bp)
AAGAGGTCCTATTACATGGATCCAC
LOC_Os05g43950
Os.18072.1.S1_x_at--699--7971Chr01:31919835..31919859 (25 bp)
GGATCCACAACCATCTAACAGCTAT
LOC_Os01g54930
Os.18072.1.S1_x_at--1060--9811Chr01:31919820..31919844 (25 bp)
TAACAGCTATGAATGGCACCTCTAT
LOC_Os01g54930
Os.18072.1.S1_x_at--21--6611Chr01:31919780..31919804 (25 bp)
GATTGTGATGCTTTTGCCCTATACA
LOC_Os01g54930
Os.18072.1.S1_x_at--344--4931Chr01:31919754..31919778 (25 bp)
GCTTGAATTCAAGTCCTCTGATGCA
LOC_Os01g54930
Os.18072.1.S1_x_at--274--4751Chr01:31919664..31919688 (25 bp)
GCTGAGTGCAGATAGCCCTGTCGAA
LOC_Os01g54930
Os.18072.1.S1_x_at--518--8711Chr01:31919646..31919670 (25 bp)
TGTCGAAAACAAACGGTCTGCCCGC
LOC_Os01g54930
Os.18072.1.S1_x_at--112--5031Chr01:31919528..31919552 (25 bp)
GCAGTGTCACAACCGGACCAGATGA
LOC_Os01g54930
Os.18072.1.S1_x_at--887--2991Chr01:31919489..31919513 (25 bp)
AATGTTGTTTATGGGCCTCATCTCC
LOC_Os01g54930
Os.18072.1.S1_x_at--287--9491Chr01:31919469..31919493 (25 bp)
TCTCCCATACGGTTACTCAACTGAA
LOC_Os01g54930
Target Sequence 
AGAGAGTGGCTGTTCTTTGACAAGCCAAGACGAGCATTTGAGAGTGGAAATCGAAAGCAAAGGTCATTGCCAGATTACAA
TGGCCGTGGTTGGCATGAATCAAGGAAGCAAGTGATGAAAGACTTTGGGGGTCTGAAGAGGTCCTATTACATGGATCCAC
AACCATCTAACAGCTATGAATGGCACCTCTATGAGTATGAGATCAATGATTGTGATGCTTTTGCCCTATACAGGCTTGAA
TTCAAGTCCTCTGATGCAAAGAAAACTGCTAAATCAAAATTAGCTTGTAACCCACTGAATGAAATCCAGCAGCAAATGGT
TAGGCTGAGTGCAGATAGCCCTGTCGAAAACAAACGGTCTGCCCGCAGCAGGACAAAGGCTAACCCAAATGATATCAATA
GCAACATCTACTTAGTTCAGAACACTACAGTTCAAGGCAGTATTCCAAATGCTTATCAGGCAGTGTCACAACCGGACCAG
ATGACGTATTTGAATGGCAATGTTGTTTATGGGCCTCATCTCCCATACGGTTACTCAACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18072.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis