Browse Element(s) Details

Os.50933.2.S1_x_at

Description

gb:AK059545.1
DB_XREF= gi:32969563
TID=Os.50933.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F04, full insert sequence.
FL= gb:AK059545.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09280	11/11	Helicase associated domain family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09220	Os.54734.1.S1_at	10/11	6	+	4632667..4634470	Cytochrome P450 family protein, expressed
LOC_Os06g09220	OsAffx.15322.1.S1_x_at	1/11	6	+	4632667..4634470	Cytochrome P450 family protein, expressed
LOC_Os06g09230	OsAffx.15330.1.S1_at	11/11	6	+	4640564..4643874	serine threonine kinase, putative, expressed
LOC_Os06g09230	OsAffx.15330.1.S1_x_at	11/11	6	+	4640564..4643874	serine threonine kinase, putative, expressed
LOC_Os06g09240	NA	NA	6	+	4646955..4648522	Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250	OsAffx.31228.1.S1_at	2/11	6	+	4648582..4649154	hypothetical protein
LOC_Os06g09260	OsAffx.15332.1.S1_s_at	11/11	6	+	4649897..4650520	expressed protein
LOC_Os06g09270	Os.55786.1.S1_at	11/11	6	+	4652461..4654653	hypro1, putative, expressed
LOC_Os06g09270	OsAffx.12199.1.A1_at	1/11	6	+	4652461..4654653	hypro1, putative, expressed
LOC_Os06g09280	Os.50933.2.S1_x_at	11/11	6	+	4658378..4665891	Helicase associated domain family protein, expressed
LOC_Os06g09290	Os.291.1.S1_at	11/11	6	+	4666493..4669889	26S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300	OsAffx.4779.1.S1_at	11/11	6	+	4671873..4672673	hypothetical protein
LOC_Os06g09310	Os.52944.1.A1_at	11/11	6	+	4677839..4679100	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320	Os.18144.1.S1_at	11/11	6	+	4686061..4689299	tac7077, putative, expressed
LOC_Os06g09330	Os.12080.1.S1_at	11/11	6	+	4689943..4694298	Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330	Os.20722.1.S1_a_at	1/11	6	+	4689943..4694298	Ubiquitin-conjugating enzyme E2 J2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion
GO:0003723	molecular_function	RNA binding
GO:0003724	molecular_function	RNA helicase activity
GO:0004004	molecular_function	ATP-dependent RNA helicase activity
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50933.2.S1_x_at--730--17	1	Chr06:4664871..4664895 (25 bp)	ATTTCATCAATTACCGGTCTCTAAG	LOC_Os06g09280
Os.50933.2.S1_x_at--404--225	1	Chr06:4665260..4665284 (25 bp)	AAATTCAGGGCCATGTCCAACAAAT	LOC_Os06g09280
Os.50933.2.S1_x_at--124--567	1	Chr06:4665313..4665337 (25 bp)	GACATGGTTCTGTTCCGGAGATGCC	LOC_Os06g09280
Os.50933.2.S1_x_at--944--215	1	Chr06:4665340..4665364 (25 bp)	ACAGCTGCTTTCTTCTTGAATGCCG	LOC_Os06g09280
Os.50933.2.S1_x_at--434--625	1	Chr06:4665379..4665561 (25 bp)	GATGGATCATACAGGGCTCTTGCAA	LOC_Os06g09280
Os.50933.2.S1_x_at--861--401	1	Chr06:4665586..4665610 (25 bp)	CGTCATCGGTGCTCTTCCAAAAGAA	LOC_Os06g09280
Os.50933.2.S1_x_at--670--265	1	Chr06:4665609..4665633 (25 bp)	AAGCCAGATTGTGCCATCTTCAACG	LOC_Os06g09280
Os.50933.2.S1_x_at--674--639	1	Chr06:4665677..4665701 (25 bp)	GATCGATCCCGTGTGGCTGGCTGAA	LOC_Os06g09280
Os.50933.2.S1_x_at--1086--417	1	Chr06:4665707..4665731 (25 bp)	CCCGCAATATTACGCCACTGAGGAT	LOC_Os06g09280
Os.50933.2.S1_x_at--440--641	1	Chr06:4665739..4665763 (25 bp)	GATCTGCTGCCATAGTTCACTGTAA	LOC_Os06g09280
Os.50933.2.S1_x_at--42--121	1	Chr06:4665788..4665812 (25 bp)	AGTTAATCACAGTGTCCTGTCCTGG	LOC_Os06g09280

Target Sequence

ATTTCATCAATTACCGGTCTCTAAGACATGCTTGTGATGTTCACAGCCAAATTCAGGGCCATGTCCAACAAATGGGGCTT
AACGTATCATCGTGTGGGGATGACATGGTTCTGTTCCGGAGATGCCTCACAGCTGCTTTCTTCTTGAATGCCGCAATGCG
ACAGCCAGATGGATCATACAGGGCTCTTGCAACCAGCCAGAGCGTGCAGATCCATCCGTCATCGGTGCTCTTCCAAAAGA
AGCCAGATTGTGCCATCTTCAACGAGTTGGTTCGAACGAGTCAGAATTACGTCAAGGACCTGACCCGGATCGATCCCGTG
TGGCTGGCTGAACTTGCCCCGCAATATTACGCCACTGAGGATTGATTTTGATCTGCTGCCATAGTTCACTGTAACCTTGT
AAACACCAGAGTCTGCTTAGTTAATCACAGTGTCCTGTCCTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis