Browse Element(s) Details


OsAffx.15330.1.S1_x_at

Description tigr:9634.m00875
TID=OsAffx.15330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine threonine kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0923011/11serine threonine kinase, putative, expressed
LOC_Os01g399702/11Protein kinase domain containing protein, expressed
LOC_Os02g126601/11protein kinase family protein, putative, expressed
LOC_Os02g545901/11serine threonine kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15330.1.S1_x_at--435--7112Chr01:22868321..22868345 (25 bp)
GTCAGCAAGATCAGCGACGTCGGGC
LOC_Os01g39970
OsAffx.15330.1.S1_x_at--288--5431Chr06:4641059..4641083 (25 bp)
GAACGTCGCCGACAACGTGACGCAG
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--23--2591Chr06:4641046..4641070 (25 bp)
AACGTGACGCAGTACCGGATGACGT
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--95--6734Chr02:33432370..33432393 (24 bp)
GTTCTGCTACATCGACCCGGAGTAC
LOC_Os02g54590
OsAffx.15330.1.S1_x_at--564--4011Chr06:4640963..4640987 (25 bp)
CGTCAAGTCGGACGTGTACTCGCTG
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--835--8651Chr06:4640940..4640964 (25 bp)
TGGGCGTGATGCTGCTCCAGATCAT
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--566--4231Chr06:4640793..4640817 (25 bp)
CCGAGATGGCGCTCCGCTGCTGCGA
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--41--2211Chr06:4640691..4640715 (25 bp)
ACAACATGCAGTTCTGCGGCGCCAT
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--708--10871Chr06:4640655..4640679 (25 bp)
TTGGCGGCGGCTTGTACAGCTCGTC
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--539--9331Chr06:4640614..4640638 (25 bp)
TCGCGCTCACAAGCAGCAGTAACTG
LOC_Os06g09230
OsAffx.15330.1.S1_x_at--921--5011Chr06:4640599..4640623 (25 bp)
GCAGTAACTGGACTAACCTTTCTTC
LOC_Os06g09230
Target Sequence 
GTCAGCAAGATCAGCGACGTCGGGCTGGCGCGGCTCGTGCCGCCGAACGTCGCCGACAACGTGACGCAGTACCGGATGAC
GTCGACGGCGGGGACGTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGGATGCTCGGCGTCAAGTCGGACGTGTACT
CGCTGGGCGTGATGCTGCTCCAGATCATCACGGCCAAGCCGCCGATGGGGCTCACCCACCACGTCGGCCGCGCCATGGAG
CGCGGCGCGCTCGCCGACATGCTCGACCCGGCCGTCCCCGACTGGCCCGTCGAGGAGGCGCAGTGCCTCGCCGAGATGGC
GCTCCGCTGCTGCGAGCTCCGCCGCAAGGACAGGCCCGACCTCGGCTCCGCCGTGCTCCCGGAGCTCAACCGGCTTCGCG
CGCTCGGCGAGGACAACATGCAGTTCTGCGGCGCCATCAGAGGCGGCGTTGGCGGCGGCTTGTACAGCTCGTCCCTCCTC
AGCACCCCCTCGCGCTCACAAGCAGCAGTAACTGGACTAACCTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15330.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis