Browse Element(s) Details


Os.291.1.S1_at

Description gb:AB033535.1
DB_XREF= gi:11094189
GEN=OsRPT1
TID=Os.291.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.291 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPT1 mRNA for 26S proteasome regulatory particle triple-A ATPase subunit1, complete cds.
PROD=26S proteasome regulatory particle triple-AATPase subunit1
FL= gb:AK100060.1 gb:AK061876.1 gb:AK103801.1 gb:AB033535.1 gb:AK070538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0929011/1126S protease regulatory subunit 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.291.1.S1_at--84--8171Chr06:4668970..4668994 (25 bp)
GGAAACATCAAGGTCCTCATGGCCA
LOC_Os06g09290
Os.291.1.S1_at--1108--4031Chr06:4669005..4669029 (25 bp)
CGATACCTTGGACCCTGCATTACTA
LOC_Os06g09290
Os.291.1.S1_at--117--4951Chr06:4669021..4669045 (25 bp)
GCATTACTACGTCCAGGGCGTCTGG
LOC_Os06g09290
Os.291.1.S1_at--763--1071Chr06:4669079..4669103 (25 bp)
AGGGCCGGACCCAGATCTTCAAGAT
LOC_Os06g09290
Os.291.1.S1_at--298--5091Chr06:4669112..4669136 (25 bp)
GCACCATGAACTGCGAGCGGGACAT
LOC_Os06g09290
Os.291.1.S1_at--312--7631Chr06:4669130..4669154 (25 bp)
GGGACATCCGGTTTGAGCTGCTCGC
LOC_Os06g09290
Os.291.1.S1_at--189--1651Chr06:4669424..4669448 (25 bp)
AGCGCAACGCCCAAGTATATGGTGT
LOC_Os06g09290
Os.291.1.S1_at--1005--10031Chr06:4669454..4669478 (25 bp)
TAGAGGGCACTGACCTTGATTTCCC
LOC_Os06g09290
Os.291.1.S1_at--659--2331Chr06:4669512..4669536 (25 bp)
AAAGATTGAGCCTGTTTGTTTCCCT
LOC_Os06g09290
Os.291.1.S1_at--768--5551Chr06:4669550..4669574 (25 bp)
GAAACCTGGGCTGTTTTCTGCATCA
LOC_Os06g09290
Os.291.1.S1_at--307--10591Chr06:4669565..4669589 (25 bp)
TTCTGCATCATATGACACGCTGGGA
LOC_Os06g09290
Target Sequence 
GGAAACATCAAGGTCCTCATGGCCACCAACAGGCCCGATACCTTGGACCCTGCATTACTACGTCCAGGGCGTCTGGACAG
GAAAGTTGAGTTTGGCCTGCCAGACCTGGAGGGCCGGACCCAGATCTTCAAGATCCACACTCGCACCATGAACTGCGAGC
GGGACATCCGGTTTGAGCTGCTCGCTCGCCTCTGCCCCAACTCCACTGGGGCCGACATACGGAGTGTGTGCACGGAGGCT
GGCATGTACGCCATCCGCGCTCGCAGGAAGACGGTGACAGAGAAGGATTTCTTGGACGCGGTGAATAAGGTGATCAAGGG
TTACCAAAAGTTCAGCGCAACGCCCAAGTATATGGTGTACAACTAGAGGGCACTGACCTTGATTTCCCGTTTCTTCCTGT
GCCCCTCCTTTGGACCTTCAGAAAGATTGAGCCTGTTTGTTTCCCTTTCTTACTCAAAAGAAACCTGGGCTGTTTTCTGC
ATCATATGACACGCTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis