Browse Element(s) Details


Os.20722.1.S1_a_at

Description gb:AK066966.1
DB_XREF= gi:32976984
TID=Os.20722.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.20722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089C16, full insert sequence.
FL= gb:AK066966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g093301/11Ubiquitin-conjugating enzyme E2 J2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20722.1.S1_a_at--1140--2592Chr11:11645007..11645031 (25 bp)
AACGCAGTTCTGTAATCTAGCTTAA
NONE
Os.20722.1.S1_a_at--247--9832Chr11:11645024..11645048 (25 bp)
TAGCTTAACTCAGACCGATTCCTTA
NONE
Os.20722.1.S1_a_at--261--3432Chr11:11645034..11645058 (25 bp)
CAGACCGATTCCTTATTTTATTGAT
NONE
Os.20722.1.S1_a_at--140--6473Chr11:11645056..11645080 (25 bp)
GATAATCTCATCTATTTGTCATGTG
NONE
Os.20722.1.S1_a_at--840--9772Chr11:11645088..11645112 (25 bp)
TAAGTGGCGCTTAAACAACAATGAA
NONE
Os.20722.1.S1_a_at--546--2232Chr11:11645113..11645137 (25 bp)
ACAATTGTCCAGATGTGGTTGGAAC
NONE
Os.20722.1.S1_a_at--506--2432Chr11:11645138..11645162 (25 bp)
AAAACCATATCCACTTGCCGTCAAA
NONE
Os.20722.1.S1_a_at--893--6791Chr05:5907942..5907966 (25 bp)
GTTATTTCTTGTTCTTCGTATGGTT
NONE
Os.20722.1.S1_a_at--753--2331Chr05:5907917..5907941 (25 bp)
AAAGATGGTCTTCCTCGTATGGTCG
NONE
Os.20722.1.S1_a_at--1027--4092Chr11:11645242..11645265 (24 bp)
CGAAGATGGTCTTGTTTCTCACTAT
NONE
Os.20722.1.S1_a_at--1065--3612Chr11:11645274..11645298 (25 bp)
CTTGTGCTTGCAGATGGATGATACT
NONE
Target Sequence 
AACGCAGTTCTGTAATCTAGCTTAACTCAGACCGATTCCTTATTTTATTGATAATCTCATCTATTTGTCATGTGAGTAAT
TTAAGTGGCGCTTAAACAACAATGAAACAATTGTCCAGATGTGGTTGGAACAAAACCATATCCACTTGCCGTCAAAAAAA
AAGAAAAGAAAAATAAGTGCAAATTTGTTATTTCTTGTTCTTCGTATGGTTAAAGATGGTCTTCCTCGTATGGTCGAAGA
TGGTCTTGTTTCTCACTATGAATTATTCTTGTGCTTGCAGATGGATGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20722.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis