Browse Element(s) Details


Os.8790.1.S1_a_at

Description gb:AY238991.1
DB_XREF= gi:29424046
GEN=PTF1
TID=Os.8790.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8790 (NCBI UniGene Cluster)
DEF=Oryza sativa bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
PROD=bHLH transcription factor PTF1
FL= gb:AY238991.1 gb:AK065667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0937011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g09380OsAffx.4780.1.S1_at11/116+4719601..4720428hypothetical protein
LOC_Os06g09390Os.7177.1.S1_at11/116+4730331..4732912ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8790.1.S1_a_at--885--1151Chr06:4709306..4709330 (25 bp)
AGTAATCCATCTCTATCAGCTTCAA
LOC_Os06g09370
Os.8790.1.S1_a_at--963--1551Chr06:4709289..4709313 (25 bp)
AGCTTCAACCATTTCACAAGGGCCA
LOC_Os06g09370
Os.8790.1.S1_a_at--720--5711Chr06:4709252..4709276 (25 bp)
GACTCAGAAGACAGCTCTGCCTTTG
LOC_Os06g09370
Os.8790.1.S1_a_at--1145--831Chr06:4709207..4709231 (25 bp)
ATGGAAACGAGCATCATCAGCGCGA
LOC_Os06g09370
Os.8790.1.S1_a_at--243--391Chr06:4709192..4709216 (25 bp)
ATCAGCGCGATGCAGTATCTTCAGA
LOC_Os06g09370
Os.8790.1.S1_a_at--509--2891Chr06:4709165..4709189 (25 bp)
AAGGGTCTCTGCCTGATGCCCATTG
LOC_Os06g09370
Os.8790.1.S1_a_at--949--4891Chr06:4709135..4709159 (25 bp)
GCTTCGGCCATATCCAACCAGAAAG
LOC_Os06g09370
Os.8790.1.S1_a_at--759--5671Chr06:4709027..4709051 (25 bp)
GACATAATAACTCAACGGCTGCAGA
LOC_Os06g09370
Os.8790.1.S1_a_at--91--8311Chr06:4708916..4708940 (25 bp)
GGCTTATGACACAATCTACTCTATA
LOC_Os06g09370
Os.8790.1.S1_a_at--118--1151Chr06:4708892..4708916 (25 bp)
AGTCTATAGCTATTGTGTGCCTGTT
LOC_Os06g09370
Os.8790.1.S1_a_at--514--7291Chr06:4708876..4708900 (25 bp)
GTGCCTGTTGCACATCAGTTGATGT
LOC_Os06g09370
Target Sequence 
AGTAATCCATCTCTATCAGCTTCAACCATTTCACAAGGGCCACCAGACATGCCAGACTCAGAAGACAGCTCTGCCTTTGA
GCAAGAGGTAGTGAAGCTGATGGAAACGAGCATCATCAGCGCGATGCAGTATCTTCAGAACAAGGGTCTCTGCCTGATGC
CCATTGCTCTCGCTTCGGCCATATCCAACCAGAAAGGCATGGCTGCTGCTGCTGCAATCCCTCCTGAAAAATGAAAAAAA
AAATGAAATCGGAAAAATATGGGGGGAACAACTGCAGAAGACATAATAACTCAACGGCTGCAGAAATGTGCTGGACACTG
CAGGTTTTGTGAATGAAGTGAAATCCAATCCAGGGGGTCATAAAACATAGGAAGTTATCTGACTAATTCAGGCTTATGAC
ACAATCTACTCTATAGTCTATAGCTATTGTGTGCCTGTTGCACATCAGTTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8790.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis