Browse Element(s) Details


Os.7764.1.S1_at

Description gb:AK062548.1
DB_XREF= gi:32972566
TID=Os.7764.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G10, full insert sequence.
FL= gb:AK062548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g093509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g09380OsAffx.4780.1.S1_at11/116+4719601..4720428hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7764.1.S1_at--144--391Chr06:4703723..4703747 (25 bp)
ATCACAGCTTTCCATCGCTGCAGCA
LOC_Os06g09350
Os.7764.1.S1_at--912--5031Chr06:4703706..4703728 (23 bp)
GCAGCAACTGCTAACAAGAAGGTGT
LOC_Os06g09350
Os.7764.1.S1_at--603--4351Chr06:4703551..4703575 (25 bp)
CCAGTTGAGAGGGATTGTGTGCTAC
LOC_Os06g09350
Os.7764.1.S1_at--573--2891Chr06:4703486..4703510 (25 bp)
AAGGTCCAAGGCTCGGAATGCGGCT
LOC_Os06g09350
Os.7764.1.S1_at--584--8431Chr06:4703283..4703307 (25 bp)
GGCCTATGGAGGTTCAGATCACTGA
LOC_Os06g09350
Os.7764.1.S1_at--238--391Chr06:4703266..4703290 (25 bp)
ATCACTGATTTCATTGAGCTGGCGA
LOC_Os06g09350
Os.7764.1.S1_at--292--6691Chr06:4703240..4703264 (25 bp)
GTTCCGGGTCTTCGAAGATGCCGAT
LOC_Os06g09350
Os.7764.1.S1_at--774--1291Chr06:4703225..4703249 (25 bp)
AGATGCCGATGTTCTTCAGATCAAG
LOC_Os06g09350
Os.7764.1.S1_at--588--6711Chr06:4703071..4703095 (25 bp)
GTTCTGATGTAGTTCTGTACCCTCT
LOC_Os06g09350
Os.7764.1.S1_at--382--6871NONE
GTTTGGCTAATTTTTCAGATTTACA
NONE
Os.7764.1.S1_at--46--2071NONE
ACTTGTACATTTGTCCTTGTGAAGC
NONE
Target Sequence 
ATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAG
ATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTC
CCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCA
GATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAA
TGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATA
TAGTTTGGCTAATTTTTCAGATTTACAATTCTGTGCTTTTAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGT
CCTTGTGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis