Browse Element(s) Details


OsAffx.27525.1.S1_x_at

Description tigr:9634.m00885
TID=OsAffx.27525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectinesterase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0934011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g09380OsAffx.4780.1.S1_at11/116+4719601..4720428hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27525.1.S1_x_at--473--8351Chr06:4701356..4701380 (25 bp)
GGCGGCGTACCGGTGCGGCGTCGAG
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--1081--951Chr06:4701388..4701412 (25 bp)
AGGACTCTCTCTACGCGCACTCGTT
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--764--4031Chr06:4701409..4701433 (25 bp)
CGTTCCGCCAGTTCTACCGCGAGTG
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--205--1231Chr06:4701418..4701442 (25 bp)
AGTTCTACCGCGAGTGCGCCGTCTC
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--997--1131Chr06:4701526..4701550 (25 bp)
AGTCCAACGTCCTCACGGCGCAGGC
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--42--4071Chr06:4701556..4701580 (25 bp)
GCGACCCCAACGAGGACACGGGCTT
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--177--5631Chr06:4701570..4701594 (25 bp)
GACACGGGCTTCTCCGTGCACAACT
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--1105--7331Chr06:4701585..4701609 (25 bp)
GTGCACAACTGCACGGTGGTCGCCT
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--655--4211Chr06:4701763..4701787 (25 bp)
CCGAGACGGTGTACTTCGGTGAGTA
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--287--8411Chr06:4701833..4701857 (25 bp)
GGCCGGGTTCCATGATATGGGCTAC
LOC_Os06g09340
OsAffx.27525.1.S1_x_at--256--7671Chr06:4701837..4701861 (25 bp)
GGGTTCCATGATATGGGCTACGACG
LOC_Os06g09340
Target Sequence 
GGCGGCGTACCGGTGCGGCGTCGAGGGCCACCAGGACTCTCTCTACGCGCACTCGTTCCGCCAGTTCTACCGCGAGTGCG
CCGTCTCCGGCACCGTCGACCTCGTCTTCGGCGACGCCGCCGCCGTCCTCCAGGCGTGCGAGCTCGTCGCCGGCGCCCCC
GTCGCCGGCCAGTCCAACGTCCTCACGGCGCAGGCGCGCGGCGACCCCAACGAGGACACGGGCTTCTCCGTGCACAACTG
CACGGTGGTCGCCTCGCCGGAGCTCCTCGCCAGCGGCGTCAGCACGCGCACCTTCCTGGGCCGGCCGTGGCGGCCCTACG
CCCGCGCCGTCGTCATGGACTCCTACCTCGGCCCGCTCGTCGACCGGGCCGGCTGGGTCGAGTGGCCCGGCGCCGAGCCC
GGCCGCGCCGAGACGGTGTACTTCGGTGAGTATGGGAATGGCGGGCCGGGCGCCGCCATGGACGGCCGCGTCGGATGGGC
CGGGTTCCATGATATGGGCTACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27525.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis