Browse Element(s) Details


Os.18144.1.S1_at

Description gb:AK103169.1
DB_XREF= gi:32988378
TID=Os.18144.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121F18, full insert sequence.
FL= gb:AK103169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0932011/11tac7077, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18144.1.S1_at--288--2711Chr06:4688754..4688778 (25 bp)
AAGCTTCTTTCTTGGGTAGTACCAG
LOC_Os06g09320
Os.18144.1.S1_at--379--3431Chr06:4688776..4688800 (25 bp)
CAGAGTTCTGACACTTGATTCGGTA
LOC_Os06g09320
Os.18144.1.S1_at--1098--8051Chr06:4688801..4688825 (25 bp)
GGAGACGCACCATTTGAGAGCAGCA
LOC_Os06g09320
Os.18144.1.S1_at--966--6751Chr06:4688861..4688885 (25 bp)
GTTCAACCCATTCCAGTATGTCAGA
LOC_Os06g09320
Os.18144.1.S1_at--133--6411Chr06:4688895..4688919 (25 bp)
GATCTACAACATCCCTAGGCAAAGA
LOC_Os06g09320
Os.18144.1.S1_at--290--891Chr06:4688958..4688982 (25 bp)
AGGCTCCAGTTTTAGTATGTCTCCC
LOC_Os06g09320
Os.18144.1.S1_at--614--1191Chr06:4688971..4688995 (25 bp)
AGTATGTCTCCCATGTGATTCAAGA
LOC_Os06g09320
Os.18144.1.S1_at--762--1271Chr06:4689138..4689162 (25 bp)
AGATCTTTAACTTTCTCGCCTGTGA
LOC_Os06g09320
Os.18144.1.S1_at--11--7411Chr06:4689159..4689183 (25 bp)
GTGATCTCTCATTCTGCGTTTTTAA
LOC_Os06g09320
Os.18144.1.S1_at--664--1211Chr06:4689199..4689223 (25 bp)
AGTTGAATCCAGGTCCGGGAGGCTC
LOC_Os06g09320
Os.18144.1.S1_at--582--351Chr06:4689252..4689276 (25 bp)
ATAATACCACCTCCGTTGCAAAAAT
LOC_Os06g09320
Target Sequence 
AAGCTTCTTTCTTGGGTAGTACCAGAGTTCTGACACTTGATTCGGTAGGAGACGCACCATTTGAGAGCAGCAGATGTCTC
GGTAGACTTTGATTTCTGAAGAAACATGTTCAACCCATTCCAGTATGTCAGAGTTAAATAGGATCTACAACATCCCTAGG
CAAAGACTGGCAGAATGAACGTTGTTGCAGAATGAAGGTCTGGAAGGCTCCAGTTTTAGTATGTCTCCCATGTGATTCAA
GACGAATTTGCAATGTTGACGACTGAAACCGTCTTCACTCTTCAGTTCTTTTACCCTGCTGTGGGGTGTATATATTGACA
CTGCTATAACCTCAATGAATTTGGGGAACGCTTCATATAAATTTGACATGCGTGTGAGCGTGTTAGATCTTTAACTTTCT
CGCCTGTGATCTCTCATTCTGCGTTTTTAAGTGTAGATCGGCAAAAGTTGAATCCAGGTCCGGGAGGCTCATGGCTTTGT
AACTGGATACGGACAAATATAATACCACCTCCGTTGCAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis