Browse Element(s) Details


Os.7177.1.S1_at

Description gb:BP184460
DB_XREF= gi:32947888
DB_XREF=BP184460
TID=Os.7177.1
CNT=135
FEA=FLmRNA
TIER=Stack
STK=15
UG=Os.7177 (NCBI UniGene Cluster)
UG_TITLE=EREBP-like protein (tsh1) mRNA, complete cds
FL= gb:AK069833.1 gb:AF190770.1 gb:AK060742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0939011/11ethylene response element binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g09380OsAffx.4780.1.S1_at11/116+4719601..4720428hypothetical protein
LOC_Os06g09390Os.7177.1.S1_at11/116+4730331..4732912ethylene response element binding protein, putative, expressed
LOC_Os06g09400OsAffx.27527.1.S1_at10/116+4747811..4748959hypothetical protein
LOC_Os06g09410NANA6+4755561..4756367transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7177.1.S1_at--940--5651Chr06:4732080..4732104 (25 bp)
GACAGGTGTTGATGACTCCGCATTC
LOC_Os06g09390
Os.7177.1.S1_at--1153--71Chr06:4732101..4732125 (25 bp)
ATTCCTCCAGAACAATGCCAGTGAT
LOC_Os06g09390
Os.7177.1.S1_at--504--7391Chr06:4732121..4732145 (25 bp)
GTGATGCAATGGTACCTCCTGTGAT
LOC_Os06g09390
Os.7177.1.S1_at--57--10791Chr06:4732160..4732184 (25 bp)
TTGATCTTGCTGACCTGGAGCCGTA
LOC_Os06g09390
Os.7177.1.S1_at--801--771Chr06:4732256..4732280 (25 bp)
ATGTGGCCAGTAGCATGGACCTTTG
LOC_Os06g09390
Os.7177.1.S1_at--924--8071Chr06:4732280..4732304 (25 bp)
GGAGCTTCGATGACATGCCCGTGTC
LOC_Os06g09390
Os.7177.1.S1_at--922--91Chr06:4732461..4732485 (25 bp)
ATTCTGGACATCCAAGAAGCGGCAT
LOC_Os06g09390
Os.7177.1.S1_at--475--3991Chr06:4732494..4732518 (25 bp)
CGGGCGCTTCTAGTTGCGCTATATA
LOC_Os06g09390
Os.7177.1.S1_at--490--7311Chr06:4732540..4732564 (25 bp)
GTGCTGTGTCTAGCTTAGATGCTGA
LOC_Os06g09390
Os.7177.1.S1_at--930--6331Chr06:4732557..4732581 (25 bp)
GATGCTGAAGTCTCAAGTACTATTT
LOC_Os06g09390
Os.7177.1.S1_at--1010--2631Chr06:4732672..4732696 (25 bp)
AACCTTGTGGATCTGAACTCTGAAG
LOC_Os06g09390
Target Sequence 
GACAGGTGTTGATGACTCCGCATTCCTCCAGAACAATGCCAGTGATGCAATGGTACCTCCTGTGATGGGGAATGCTAGCA
TTGATCTTGCTGACCTGGAGCCGTACATGAAATTTCTGATCGATGGTGGTTCGGATGAGTCGATTGACACCCTTCTGAGC
TCTGATGGATCTCAGGATGTGGCCAGTAGCATGGACCTTTGGAGCTTCGATGACATGCCCGTGTCGGCCGAGTTCTACTG
AGGGGTTTGGGGTGTAGCAACTGGTGCCTGTATATATAAGGACAAATGGAATAAACATTCTGGACATCCAAGAAGCGGCA
TGTGTCTGTCGGGCGCTTCTAGTTGCGCTATATAGCTATGTTAGTATGTTAGTATGTGCTGTGTCTAGCTTAGATGCTGA
AGTCTCAAGTACTATTTGGCAGTGAAACTATCTATCTGTAACTGCTATATGAGGCTGGAACAAGTTACTTAGCTTCTACC
TTATCTGTACTTGCTATAGTGGCTGTGAACCTTGTGGATCTGAACTCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis