Browse Element(s) Details


OsAffx.27527.1.S1_at

Description tigr:9634.m00893
TID=OsAffx.27527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0940010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09390Os.7177.1.S1_at11/116+4730331..4732912ethylene response element binding protein, putative, expressed
LOC_Os06g09400OsAffx.27527.1.S1_at10/116+4747811..4748959hypothetical protein
LOC_Os06g09410NANA6+4755561..4756367transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09420Os.49655.1.S1_at11/116+4761005..4763619B3 DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27527.1.S1_at--741--4951Chr06:4748877..4748901 (25 bp)
GCAGGCCGACGGAAGAACCCCATGG
LOC_Os06g09400
OsAffx.27527.1.S1_at--685--5432Chr08:22188976..22189056 (25 bp)
GAACCCCATGGAGAACAGCGTGACG
NONE
OsAffx.27527.1.S1_at--771--7372Chr08:22188957..22188981 (25 bp)
GTGACGGCACGATGTACACCAGCAC
NONE
OsAffx.27527.1.S1_at--118--2171NONE
ACACCAGCACCAGTTGTGTTTGCAA
NONE
OsAffx.27527.1.S1_at--699--7435Chr09:5034607..5034628 (22 bp)
GTGTTTGCAAAGTGAGCGTAGCTCA
NONE
OsAffx.27527.1.S1_at--602--1632Chr01:16298435..16298901 (25 bp)
AGCGTAGCTCAATTGGTTAAGTTCC
NONE
OsAffx.27527.1.S1_at--221--8171Chr06:4748080..4748104 (25 bp)
GGAACCAGTCCACCCGGAATCAAGT
LOC_Os06g09400
OsAffx.27527.1.S1_at--1019--9231Chr06:4747976..4748080 (25 bp)
TCCTACACTTGACACGGGATCCATA
LOC_Os06g09400
OsAffx.27527.1.S1_at--1094--7651Chr06:4747961..4747984 (24 bp)
GGGATCCATACCAGTCAACTTACAG
LOC_Os06g09400
OsAffx.27527.1.S1_at--737--2992Chr06:4740490..4740514 (25 bp)
AATGAGCCCTCCAGCATATTCCCAA
NONE
OsAffx.27527.1.S1_at--284--2371Chr06:4747879..4747903 (25 bp)
AAACGCAGCATATTCCCAATGCCGC
LOC_Os06g09400
Target Sequence 
GCAGGCCGACGGAAGAACCCCATGGAGAACAGCGTGACGGCACGATGTACACCAGCACCAGTTGTGTTTGCAAAGTGAGC
GTAGCTCAATTGGTTAAGTTCCTGATGGCGGAACCAGTCCACCCGGAATCAAGTCCTACACTTGACACGGGATCCATACC
AGTCAACTTACAGCATTCAAATGAGCCCTCCAGCATATTCCCAAAGCACAATACAAGAAATGATGAAAACAAACGCAGCA
TATTCCCAATGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis