Browse Element(s) Details


Os.49655.1.S1_at

Description gb:AK102980.1
DB_XREF= gi:32988189
TID=Os.49655.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115O10, full insert sequence.
FL= gb:AK102980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0942011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09400OsAffx.27527.1.S1_at10/116+4747811..4748959hypothetical protein
LOC_Os06g09410NANA6+4755561..4756367transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09420Os.49655.1.S1_at11/116+4761005..4763619B3 DNA binding domain containing protein, expressed
LOC_Os06g09430OsAffx.27528.1.S1_at11/116+4787158..4787403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49655.1.S1_at--184--10851Chr06:4762083..4762107 (25 bp)
TTGGTGTTCCAACTTATCCAGCGCA
LOC_Os06g09420
Os.49655.1.S1_at--947--571Chr06:4762098..4762120 (23 bp)
ATCCAGCGCACGAAGTTCAAGGTCT
LOC_Os06g09420
Os.49655.1.S1_at--450--5791Chr06:4762538..4762562 (25 bp)
GACGACTGATGTAGAGGCTCCAAAT
LOC_Os06g09420
Os.49655.1.S1_at--681--9071Chr06:4763180..4763204 (25 bp)
TGCTAGGCCATCTTCAGTCTTTTGA
LOC_Os06g09420
Os.49655.1.S1_at--1137--10431Chr06:4763247..4763271 (25 bp)
TTATGGACTAGCCATCCTCAGTCTT
LOC_Os06g09420
Os.49655.1.S1_at--1000--10331Chr06:4763342..4763366 (25 bp)
TTTACTTTGAGCTTGCACAGTTCAG
LOC_Os06g09420
Os.49655.1.S1_at--153--151Chr06:4763427..4763451 (25 bp)
ATTACTCCTTATGTGATGCGTCTGA
LOC_Os06g09420
Os.49655.1.S1_at--973--7391Chr06:4763439..4763463 (25 bp)
GTGATGCGTCTGAATTCCTGATTTC
LOC_Os06g09420
Os.49655.1.S1_at--379--4991Chr06:4763483..4763507 (25 bp)
GCATGCTTTGTGGACTAGGCTACAA
LOC_Os06g09420
Os.49655.1.S1_at--8--5691Chr06:4763576..4763600 (25 bp)
GACATTTTGTGTTCTCTCTCAAGCA
LOC_Os06g09420
Os.49655.1.S1_at--1010--9711Chr06:4763594..4763618 (25 bp)
TCAAGCATCCTTCCTAGTACACAAT
LOC_Os06g09420
Target Sequence 
TTGGTGTTCCAACTTATCCAGCGCACGAAGTTCAAGGTCTACATAATCAGAGCAAGTTCCTACTATGAAACTGACGACTG
ATGTAGAGGCTCCAAATATCTGTGATTGGGGCACAGGTCTTCTAGTGAATTAGGTTGACCTGAATTGGAGATTGCTAGGC
CATCTTCAGTCTTTTGAGTGATGAACAATGTTCAAAATATTAACTACGTATTAGGTTACTTATGGACTAGCCATCCTCAG
TCTTTTGATGGCAAACAATGTCAGAAGTATTAAATTGGCATATAATTTACCAGCTAATAGGCTAAGTTGTTAGATTTACT
TTGAGCTTGCACAGTTCAGAAATCTGCACTATGTAAGGGATATCATTGCAATTGGTAACTGAGGATGCTTTTTTATACTA
TTACTCCTTATGTGATGCGTCTGAATTCCTGATTTCAGTCATTTCTTGTAAGTTAGCATGCTTTGTGGACTAGGCTACAA
GATTTCATTTACACCAGGGAAGCAATTCATCTTATGTTAACTTGTCTACTTGAGCATGTTGTTGTATGGACATTTTGTGT
TCTCTCTCAAGCATCCTTCCTAGTACACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis