Browse Element(s) Details


OsAffx.27528.1.S1_at

Description tigr:9634.m00896
TID=OsAffx.27528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09420Os.49655.1.S1_at11/116+4761005..4763619B3 DNA binding domain containing protein, expressed
LOC_Os06g09430OsAffx.27528.1.S1_at11/116+4787158..4787403hypothetical protein
LOC_Os06g09439OsAffx.31174.4.S1_x_at5/116+4790235..4791139NA
LOC_Os06g09439OsAffx.31174.5.S1_x_at4/116+4790235..4791139NA
LOC_Os06g09450Os.9127.1.S1_a_at11/116+4795487..4803233Sucrose synthase 1, putative, expressed
LOC_Os06g09450Os.26442.1.S1_at1/116+4795487..4803233Sucrose synthase 1, putative, expressed
LOC_Os06g09459NANA6+4807418..4807637NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27528.1.S1_at--772--7971Chr06:4787332..4787356 (25 bp)
GGATGCAAATCAGAGTCGTTTCCTG
LOC_Os06g09430
OsAffx.27528.1.S1_at--131--411Chr06:4787324..4787348 (25 bp)
ATCAGAGTCGTTTCCTGATTGCAAA
LOC_Os06g09430
OsAffx.27528.1.S1_at--733--9271Chr06:4787312..4787336 (25 bp)
TCCTGATTGCAAACTGGCCTGATGA
LOC_Os06g09430
OsAffx.27528.1.S1_at--918--2371Chr06:4787302..4787326 (25 bp)
AAACTGGCCTGATGAAACTGCTTTC
LOC_Os06g09430
OsAffx.27528.1.S1_at--868--671Chr06:4787291..4787315 (25 bp)
ATGAAACTGCTTTCTCATCTGCTGA
LOC_Os06g09430
OsAffx.27528.1.S1_at--278--9611Chr06:4787277..4787301 (25 bp)
TCATCTGCTGAGCTACTCACTGATT
LOC_Os06g09430
OsAffx.27528.1.S1_at--390--5911Chr06:4787268..4787292 (25 bp)
GAGCTACTCACTGATTCTAATGAAT
LOC_Os06g09430
OsAffx.27528.1.S1_at--12--811Chr06:4787245..4787269 (25 bp)
ATGGGATCTGATTGTGTCATTTGGG
LOC_Os06g09430
OsAffx.27528.1.S1_at--551--7391Chr06:4787208..4787232 (25 bp)
GTGATGCATCACAGATTACCAGGTT
LOC_Os06g09430
OsAffx.27528.1.S1_at--86--9071Chr06:4787204..4787228 (25 bp)
TGCATCACAGATTACCAGGTTTCAG
LOC_Os06g09430
OsAffx.27528.1.S1_at--909--4311Chr06:4787190..4787214 (25 bp)
CCAGGTTTCAGGGTGAATGCCGAAA
LOC_Os06g09430
Target Sequence 
GGATGCAAATCAGAGTCGTTTCCTGATTGCAAACTGGCCTGATGAAACTGCTTTCTCATCTGCTGAGCTACTCACTGATT
CTAATGAATGGGATCTGATTGTGTCATTTGGGGCATTCATCAGTGTGATGCATCACAGATTACCAGGTTTCAGGGTGAAT
GCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis