Browse Element(s) Details


Os.9127.1.S1_a_at

Description gb:AK119193.1
DB_XREF= gi:37988816
TID=Os.9127.1
CNT=114
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9127 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for sucrose synthase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-C01, full insert sequence.
FL= gb:AK098923.1 gb:AK072074.1 gb:AK119193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0945011/11Sucrose synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09430OsAffx.27528.1.S1_at11/116+4787158..4787403hypothetical protein
LOC_Os06g09439OsAffx.31174.4.S1_x_at5/116+4790235..4791139NA
LOC_Os06g09439OsAffx.31174.5.S1_x_at4/116+4790235..4791139NA
LOC_Os06g09450Os.9127.1.S1_a_at11/116+4795487..4803233Sucrose synthase 1, putative, expressed
LOC_Os06g09450Os.26442.1.S1_at1/116+4795487..4803233Sucrose synthase 1, putative, expressed
LOC_Os06g09459NANA6+4807418..4807637NA
LOC_Os06g09470OsAffx.32056.1.S1_x_at11/116+4818447..4823823transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09470OsAffx.32056.1.S1_at11/116+4818447..4823823transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.3.S1_s_at10/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.1.S1_s_at9/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.4.S1_s_at7/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9127.1.S1_a_at--787--1671Chr06:4796473..4796497 (25 bp)
AGCCATGACATGTGGTTTGCCAACA
LOC_Os06g09450
Os.9127.1.S1_a_at--350--3511Chr06:4796436..4796460 (25 bp)
CATGGTGGCCCTGCTGAGATTATTG
LOC_Os06g09450
Os.9127.1.S1_a_at--209--7191Chr06:4796401..4796425 (25 bp)
GTCTGGTCTGCACATTGATCCTTAC
LOC_Os06g09450
Os.9127.1.S1_a_at--160--2951Chr06:4796367..4796391 (25 bp)
AAGGCTGCTGATATCTTGGTCAACT
LOC_Os06g09450
Os.9127.1.S1_a_at--981--4991Chr06:4796326..4796350 (25 bp)
GCAGGATTCAACCTACTGGGACAAT
LOC_Os06g09450
Os.9127.1.S1_a_at--655--911Chr06:4796130..4796154 (25 bp)
AGGCTGATGACCTTGACTGGTGTAT
LOC_Os06g09450
Os.9127.1.S1_a_at--115--1491Chr06:4796085..4796109 (25 bp)
AGCAACCTTGAGAGGCGCGAGACTC
LOC_Os06g09450
Os.9127.1.S1_a_at--806--4611Chr06:4796069..4796093 (25 bp)
GCGAGACTCGCCGTTACATTGAGAT
LOC_Os06g09450
Os.9127.1.S1_a_at--650--10131Chr06:4796040..4796064 (25 bp)
TATGCTCTGAAATACCGCAGCCTGG
LOC_Os06g09450
Os.9127.1.S1_a_at--150--2651Chr06:4795840..4795864 (25 bp)
AAGCCGTCAGCTGCATTCGAATTTG
LOC_Os06g09450
Os.9127.1.S1_a_at--447--6551Chr06:4795736..4795760 (25 bp)
GATTTTGGGCAGTGCTTGCCTCAAA
LOC_Os06g09450
Target Sequence 
AGCCATGACATGTGGTTTGCCAACAATCGCAACATGCCATGGTGGCCCTGCTGAGATTATTGTTGATGGGGTGTCTGGTC
TGCACATTGATCCTTACCACAGTGACAAGGCTGCTGATATCTTGGTCAACTTCTTTGAGAAGTGCAAGCAGGATTCAACC
TACTGGGACAATATTTCACAGGGAGGTCTGCNAGAGGATTTACGAGAAGTACACCTGGAAGCTGTACTCTGAGAGGCTGA
TGACCTTGACTGGTGTATANGGATTCTGGAAGTACGTAAGCAACCTTGAGAGGCGCGAGACTCGCCGTTACATTGAGATG
TTCTATGCTCTGAAATACCGCAGCCTGGCCAGCGCCGTCCCATTGGCTGTCGATGGAGAGAGCACATCCAAGTAATGGAG
GGGAAAATATGCATCTTCAGCAGGAGAAGCCGTCAGCTGCATTCGAATTTGATAATTTTCTGTAGTTGTCATTTGGCATC
CATGTTTGCCATGGATGTGTACTATGTCTAAGGTTTCAGTACTTTTGCGAGATTTTGGGCAGTGCTTGCCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9127.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis