Browse Element(s) Details


Os.53491.1.S1_at

Description gb:AK072935.1
DB_XREF= gi:32982958
TID=Os.53491.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148D10, full insert sequence.
FL= gb:AK072935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3683011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein
LOC_Os11g36770OsAffx.31332.1.S1_at11/1111+21210112..21210467hypothetical protein
LOC_Os11g36780OsAffx.19200.1.S1_at9/1111+21215525..21217131hypothetical protein
LOC_Os11g36790OsAffx.15787.2.S1_s_at11/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790Os.20602.2.S1_x_at8/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790OsAffx.15787.1.S1_at1/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36800OsAffx.19201.1.S1_at11/1111+21225853..21226323hypothetical protein
LOC_Os11g36800OsAffx.15332.1.S1_s_at2/1111+21225853..21226323hypothetical protein
LOC_Os11g36810OsAffx.7317.1.S1_s_at10/1111+21226929..21227892hypothetical protein
LOC_Os11g36820OsAffx.31333.1.S1_at11/1111+21228640..21229266hypothetical protein
LOC_Os11g36830Os.53491.1.S1_at11/1111+21229554..21231664expressed protein
LOC_Os11g36840OsAffx.31334.1.S1_at11/1111+21232860..21234826expressed protein
LOC_Os11g36850NANA11+21238490..21239782retrotransposon protein, putative, unclassified
LOC_Os11g36860NANA11+21240290..21243225retrotransposon protein, putative, unclassified
LOC_Os11g36870NANA11+21244733..21249981retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.4222.1.S1_at3/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.21100.1.S1_at2/1111+21252521..21258771retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53491.1.S1_at--602--2231Chr11:21230087..21230111 (25 bp)
AAATTACTGGCCGTTCAGCTCTTGT
LOC_Os11g36830
Os.53491.1.S1_at--1145--7371Chr11:21229997..21230021 (25 bp)
GTGACCTGGGTGACCATGTATTGTT
LOC_Os11g36830
Os.53491.1.S1_at--118--8211Chr11:21229936..21229960 (25 bp)
GGAATACCCACTGTTGAAGGCAAAC
LOC_Os11g36830
Os.53491.1.S1_at--774--3431Chr11:21229898..21229922 (25 bp)
CAGATGATTCTGAGTGCTTGGCACT
LOC_Os11g36830
Os.53491.1.S1_at--1099--9051Chr11:21229884..21229908 (25 bp)
TGCTTGGCACTCAGAACCCTGTGGG
LOC_Os11g36830
Os.53491.1.S1_at--44--6851Chr11:21229859..21229883 (25 bp)
GTTTCCGTCTTGATATTGGACTCCT
LOC_Os11g36830
Os.53491.1.S1_at--416--951Chr11:21229811..21229835 (25 bp)
AGGAAATTGTATCCCCTCGGCTTTG
LOC_Os11g36830
Os.53491.1.S1_at--480--9451Chr11:21229795..21229819 (25 bp)
TCGGCTTTGGTTGAAGTGTCGCGCT
LOC_Os11g36830
Os.53491.1.S1_at--540--7411Chr11:21229767..21229791 (25 bp)
GTGTTGCTTGTACCGAATCCTCGGA
LOC_Os11g36830
Os.53491.1.S1_at--940--8931Chr11:21229720..21229744 (25 bp)
TTAGACACAACATCCGGGAACCTCC
LOC_Os11g36830
Os.53491.1.S1_at--1036--6631Chr11:21229597..21229621 (25 bp)
GTTGTAGCCTGTTTTATTCTGTGAC
LOC_Os11g36830
Target Sequence 
AAATTACTGGCCGTTCAGCTCTTGTGAGCAACACTGGGAGGACAAAATTATATAGAGTTGATACTCTGGCTAAAGAGCTA
GTGGAAATAAGTGACCTGGGTGACCATGTATTGTTTATGGGGAATAACCAAACTTATTGTCTTTGTGCAAAGGAATACCC
ACTGTTGAAGGCAAACCATATATATTTTACAGATGATTCTGAGTGCTTGGCACTCAGAACCCTGTGGGGTTTCCGTCTTG
ATATTGGACTCCTTAACTTGAGAGATAAGAGTGTGGAGGAAATTGTATCCCCTCGGCTTTGGTTGAAGTGTCGCGCTCCT
GTGTTGCTTGTACCGAATCCTCGGAAGATGAATTCCACTTGTCACAATTAGACACAACATCCGGGAACCTCCTTTTCTTG
GGAATTTTAATGTTGCCAGGCAAGATAGTATTGATACATTGTAATAAGAAATAGGAATGTTCTTATATGCCCTGTTGCAT
TGTTAAATATGTTGTAGCCTGTTTTATTCTGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis