Browse Element(s) Details


OsAffx.7317.1.S1_s_at

Description tigr:9639.m03325
TID=OsAffx.7317.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3681010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36760OsAffx.7315.1.S1_at11/1111+21204163..21206712hypothetical protein
LOC_Os11g36770OsAffx.31332.1.S1_at11/1111+21210112..21210467hypothetical protein
LOC_Os11g36780OsAffx.19200.1.S1_at9/1111+21215525..21217131hypothetical protein
LOC_Os11g36790OsAffx.15787.2.S1_s_at11/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790Os.20602.2.S1_x_at8/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36790OsAffx.15787.1.S1_at1/1111+21218013..21222889hAT family dimerisation domain containing protein, expressed
LOC_Os11g36800OsAffx.19201.1.S1_at11/1111+21225853..21226323hypothetical protein
LOC_Os11g36800OsAffx.15332.1.S1_s_at2/1111+21225853..21226323hypothetical protein
LOC_Os11g36810OsAffx.7317.1.S1_s_at10/1111+21226929..21227892hypothetical protein
LOC_Os11g36820OsAffx.31333.1.S1_at11/1111+21228640..21229266hypothetical protein
LOC_Os11g36830Os.53491.1.S1_at11/1111+21229554..21231664expressed protein
LOC_Os11g36840OsAffx.31334.1.S1_at11/1111+21232860..21234826expressed protein
LOC_Os11g36850NANA11+21238490..21239782retrotransposon protein, putative, unclassified
LOC_Os11g36860NANA11+21240290..21243225retrotransposon protein, putative, unclassified
LOC_Os11g36870NANA11+21244733..21249981retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.4222.1.S1_at3/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.21100.1.S1_at2/1111+21252521..21258771retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7317.1.S1_s_at--875--5871Chr11:21227934..21227958 (25 bp)
GAGCGGCCCTTGTTGTTTGCCTTCA
NONE
OsAffx.7317.1.S1_s_at--433--7431Chr11:21227852..21227876 (25 bp)
GTGTTAGACCCTTATCTGACGTCAA
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--846--891Chr11:21227786..21227810 (25 bp)
AGGCGCCAACAGAGCTGAGTGCTGA
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--236--10511Chr11:21227724..21227748 (25 bp)
TTCAAGCTCAAGAAGCATTGCTCAT
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--86--4791Chr11:21227705..21227729 (25 bp)
GCTCATCAAGGCCTGTCAAACCCAA
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--919--8731Chr11:21227692..21227716 (25 bp)
TGTCAAACCCAACCCTATGTATCAT
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--578--2611Chr11:21227682..21227706 (25 bp)
AACCCTATGTATCATGGGCCACAGT
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--522--2111Chr11:21227662..21227686 (25 bp)
ACAGTGGGCCGTGTAAGTCTGTCCG
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--547--1151Chr11:21227647..21227671 (25 bp)
AGTCTGTCCGTGGTAACAGCTGGTT
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--228--6211Chr11:21227598..21227622 (25 bp)
GAGGCGAGGCGATGAGCCACATATA
LOC_Os11g36810
OsAffx.7317.1.S1_s_at--524--5471Chr11:21227572..21227596 (25 bp)
GAACTCGTGATGAACTAGGATGAAC
LOC_Os11g36810
Target Sequence 
GAGCGGCCCTTGTTGTTTGCCTTCACGTCGCCACTCGATTGCCGGAGGTCAGATGCTAGGAAGGGAATGAGCAGAGGAGA
TAGTGTTAGACCCTTATCTGACGTCAACCAGGAAGATGTTGGTGAGAAGACTGAAGCTGCTGAGGAGGAGGCGCCAACAG
AGCTGAGTGCTGAAGCTGAGCAAGAAGCAGAGCAAAGAGGAGAGGAGGACTTCAAGCTCAAGAAGCATTGCTCATCAAGG
CCTGTCAAACCCAACCCTATGTATCATGGGCCACAGTGGGCCGTGTAAGTCTGTCCGTGGTAACAGCTGGTTGACAGCTG
GCGTGTGTGGCGTGTAGAGGCGAGGCGATGAGCCACATATAAGAACTCGTGATGAACTAGGATGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7317.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis