Browse Element(s) Details


OsAffx.19197.1.S1_at

Description tigr:9639.m03310
TID=OsAffx.19197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3666011/11hypothetical protein
LOC_Os11g366702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36610OsAffx.31327.1.S1_at11/1111+21106846..21108354F-box domain containing protein, expressed
LOC_Os11g36620OsAffx.19196.2.S1_at11/1111+21109402..21110638hypothetical protein
LOC_Os11g36620OsAffx.19196.2.S1_x_at10/1111+21109402..21110638hypothetical protein
LOC_Os11g36630NANA11+21113698..21116719retrotransposon protein, putative, unclassified
LOC_Os11g36640NANA11+21117695..21123552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36650NANA11+21128380..21129756retrotransposon protein, putative, unclassified
LOC_Os11g36660OsAffx.19197.1.S1_at11/1111+21133325..21134138hypothetical protein
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19197.1.S1_at--956--1811Chr11:21134087..21134108 (22 bp)
ACGCCATGCCGTGTGGTGCAGTTGA
LOC_Os11g36660
OsAffx.19197.1.S1_at--394--5032Chr11:21133817..21133838 (22 bp)
GCAGTTGATCGGAGGTGATCGTCAT
LOC_Os11g36660
OsAffx.19197.1.S1_at--834--2571Chr11:21133759..21133783 (25 bp)
AACGAAGCCGTACACGGCACTGGCG
LOC_Os11g36660
OsAffx.19197.1.S1_at--735--9451Chr11:21133722..21133746 (25 bp)
TCGGCCTCGACGACGAACTAGCTGG
LOC_Os11g36660
OsAffx.19197.1.S1_at--227--5452Chr11:21133708..21133732 (25 bp)
GAACTAGCTGGACACGTTTCCGACG
LOC_Os11g36660
OsAffx.19197.1.S1_at--778--2171Chr11:21133697..21133721 (25 bp)
ACACGTTTCCGACGTCGATGCCGAA
LOC_Os11g36660
OsAffx.19197.1.S1_at--428--9391Chr11:21133683..21133707 (25 bp)
TCGATGCCGAACGACGTGGTGCGCC
LOC_Os11g36660
OsAffx.19197.1.S1_at--421--5831Chr11:21133642..21133666 (25 bp)
GACCGGCTACGGACCGTGGCAGCCA
LOC_Os11g36660
OsAffx.19197.1.S1_at--453--9391Chr11:21133566..21133590 (25 bp)
TCGATCGCCCTCTTCAGAGGCGGCG
LOC_Os11g36660
OsAffx.19197.1.S1_at--274--5811Chr11:21133489..21133513 (25 bp)
GACGCCGTGTCATCTCGTCTGAGGT
LOC_Os11g36660
OsAffx.19197.1.S1_at--1013--1872Chr11:21030214..21030596 (25 bp)
ACGTGCACCACAAGACAAGAATGGC
NONE
Target Sequence 
ACGCCATGCCGTGTGGTGCAGTTGATCGGAGGTGATCGTCATGTCGTCGTTCGACGCGGTGGCCGGCGGCGACGCAACGA
AGCCGTACACGGCACTGGCGCTGCAGACGAGCTCGGCCTCGACGACGAACTAGCTGGACACGTTTCCGACGTCGATGCCG
AACGACGTGGTGCGCCGTGCGCCGTGCGTCACGACCGGCTACGGACCGTGGCAGCCAGCCAGGGCGATGAGGCACTCGCT
GCACCTGCGCGGCGCGACGGCATGCTGCTCGATCGCCCTCTTCAGAGGCGGCGGCGGAACGGCGAGGAGACGCGAGCGCC
ACGCCATGCCAAGCTATGCCACGCCGACGCCGTGTCATCTCGTCTGAGGTTGCTGCTGCCGTCGCCGGCCTGGATGAGGT
GGCGGAGGCGGAGACGTGCACCACAAGACAAGAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis