Browse Element(s) Details


OsAffx.19196.2.S1_x_at

Description tigr:9639.m03306
TID=OsAffx.19196.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3662010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36580NANA11+21090202..21092329hypothetical protein
LOC_Os11g36590Os.27639.1.S1_x_at6/1111+21096454..21100408transposon protein, putative, unclassified
LOC_Os11g36590OsAffx.8980.1.S1_at2/1111+21096454..21100408transposon protein, putative, unclassified
LOC_Os11g36600NANA11+21101184..21101663hypothetical protein
LOC_Os11g36610OsAffx.31327.1.S1_at11/1111+21106846..21108354F-box domain containing protein, expressed
LOC_Os11g36620OsAffx.19196.2.S1_at11/1111+21109402..21110638hypothetical protein
LOC_Os11g36620OsAffx.19196.2.S1_x_at10/1111+21109402..21110638hypothetical protein
LOC_Os11g36630NANA11+21113698..21116719retrotransposon protein, putative, unclassified
LOC_Os11g36640NANA11+21117695..21123552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36650NANA11+21128380..21129756retrotransposon protein, putative, unclassified
LOC_Os11g36660OsAffx.19197.1.S1_at11/1111+21133325..21134138hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19196.2.S1_x_at--504--10631Chr11:21109508..21109532 (25 bp)
TTCCCGGAGGGCTACTTGATGGCCT
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--222--9891Chr11:21109520..21109544 (25 bp)
TACTTGATGGCCTCCTCGTCATGGG
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--585--3791Chr11:21109534..21109557 (24 bp)
CTCGTCATGGGCCTTGGTGGAGGTG
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--470--551Chr11:21109776..21109800 (25 bp)
ATCCCGTCAGCAGGAAGCGGCGCAA
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--765--4511Chr11:21109855..21110326 (25 bp)
GCCGCCCGACAAGGACGAGACAAGT
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--1090--4191NONE
CCGACAAGGACGAGACAAGTTTGAA
NONE
OsAffx.19196.2.S1_x_at--1054--4211Chr11:21110365..21110389 (25 bp)
CCGACATCTGGTCACTACTGGAGAA
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--352--10811Chr11:21110401..21110425 (25 bp)
TTGGTTGACCAAAAACTACACTAGT
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--1111--2411Chr11:21110412..21110436 (25 bp)
AAAACTACACTAGTCTCGGTAGAGA
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--1019--3311Chr11:21110419..21110443 (25 bp)
CACTAGTCTCGGTAGAGAAGGCGGA
LOC_Os11g36620
OsAffx.19196.2.S1_x_at--467--9451Chr11:21110583..21110607 (25 bp)
TCGGCATGAAGCGGCTAGACGCATC
LOC_Os11g36620
Target Sequence 
TTCCCGGAGGGCTACTTGATGGCCTCCTCGTCATGGGCCTTGGTGGAGGTGCAGACGCAGCTGCTCATGGCGAACGGCGC
GGCGGCGCCGGGTTCGCGGCCGACGCCTTTTCGTCCGGGGACGAGATCGACGAGGATGCCGTGGTGGAGCTCGGCGAGGC
GGATCCCGTCAGCAGGAAGCGGCGCAAGGAGAAGGAGAAGAAGAAGCGGCGCAAGGAGAAGAGGAAGCAGCGGAAGTGGG
CGCCGCCCGACAAGGACGAGACAAGTTTGAAATTAGTTTTTTCATTCGTATCTGAAAACCCCTTCCGACATCTGGTCACT
ACTGGAGAAACCATCTTTGCTTGGTTGACCAAAAACTACACTAGTCTCGGTAGAGAAGGCGGAGACGTTGGCGAGCGGCG
GGAGCTCAACGGCGGCGGCGACATCCTGTCGGCGACGGAGCACTTCAACGATGCGTACTCCATCGGCAAGGGGAGCTTCG
GGACCGTGTACAGCGCCGACCTCGGCGGCGGGCGCACCGACCTCGGCATGAAGCGGCTAGACGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19196.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis