Browse Element(s) Details


OsAffx.19198.1.S1_at

Description tigr:9639.m03311
TID=OsAffx.19198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36640NANA11+21117695..21123552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g36650NANA11+21128380..21129756retrotransposon protein, putative, unclassified
LOC_Os11g36660OsAffx.19197.1.S1_at11/1111+21133325..21134138hypothetical protein
LOC_Os11g36670OsAffx.19198.1.S1_at11/1111+21147686..21149007hypothetical protein
LOC_Os11g36670OsAffx.19197.1.S1_at2/1111+21147686..21149007hypothetical protein
LOC_Os11g36690OsAffx.31329.1.S1_at11/1111+21164045..21165849hypothetical protein
LOC_Os11g36700NANA11+21170341..21171655glycosyltransferase, putative
LOC_Os11g36719Os.6031.1.S1_at10/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_x_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.27810.1.S1_at2/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719Os.52574.2.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.20020.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed
LOC_Os11g36719OsAffx.5809.1.S1_x_at1/1111+21173712..21183442Lipoxygenase 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19198.1.S1_at--427--2731Chr11:21148118..21148142 (25 bp)
AAGAATCAAGAACACGCGGCGCGAC
LOC_Os11g36670
OsAffx.19198.1.S1_at--12--4611Chr11:21148098..21148122 (25 bp)
GCGACATCGATCTGCTCATGGCGAC
LOC_Os11g36670
OsAffx.19198.1.S1_at--727--7091Chr11:21147994..21148018 (25 bp)
GTCAAAGTGTCAAACGCGGCGCCTA
LOC_Os11g36670
OsAffx.19198.1.S1_at--275--891Chr11:21147890..21147914 (25 bp)
AGGCCTTTGGATATGCGACAGCTGC
LOC_Os11g36670
OsAffx.19198.1.S1_at--587--1591Chr11:21147871..21147895 (25 bp)
AGCTGCGCTACCACGACGATGATGT
LOC_Os11g36670
OsAffx.19198.1.S1_at--394--772Chr11:21147850..21147874 (25 bp)
ATGTCGCATCCTTCTTTTCGATTTC
LOC_Os11g36670
OsAffx.19198.1.S1_at--323--10611Chr11:21147834..21147858 (25 bp)
TTCGATTTCTTTCGGTGTCCGGAAG
LOC_Os11g36670
OsAffx.19198.1.S1_at--233--2852Chr11:21147807..21147831 (25 bp)
AAGTCGCGTGGATCCGTGTGAAGAC
LOC_Os11g36670
OsAffx.19198.1.S1_at--415--6451Chr11:21147774..21147798 (25 bp)
GATCAAGCACTTGTCCTTTAAGGCA
LOC_Os11g36670
OsAffx.19198.1.S1_at--1050--1411Chr11:21147733..21147757 (25 bp)
AGAAAAATTACACCATCTGCCTCCA
LOC_Os11g36670
OsAffx.19198.1.S1_at--488--471Chr11:21147719..21147743 (25 bp)
ATCTGCCTCCAATGATTCCTGGAAA
LOC_Os11g36670
Target Sequence 
AAGAATCAAGAACACGCGGCGCGACATCGATCTGCTCATGGCGACGCCACCGCCACCACCTGTTCGTCCCGGCGAGGGAG
CTGCAGCCAGCGCGCTCACCTCCCTCAGCTCCTGGCTGGCCTGGGTCAAAGTGTCAAACGCGGCGCCTACGAGTGGCTCG
CCTCGGCGGCGCTCCGGCTCAGCTCGTGGTGAGGAGGTGGCGCCTCTGCGTCAACCGCCGCCAAGGCAAGGCCTTTGGAT
ATGCGACAGCTGCGCTACCACGACGATGATGTCGCATCCTTCTTTTCGATTTCTTTCGGTGTCCGGAAGAGAAGTCGCGT
GGATCCGTGTGAAGACAGCGTCAAGATCAAGCACTTGTCCTTTAAGGCAGCAAACGCCAAGTGCAAGAAAAATTACACCA
TCTGCCTCCAATGATTCCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis