Browse Element(s) Details


OsAffx.24470.1.S1_at

Description tigr:9630.m02656
TID=OsAffx.24470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2792010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein
LOC_Os02g27880OsAffx.24468.1.S1_at10/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.24466.1.S1_x_at2/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.25325.1.S1_at1/112+16495886..16501371EF hand family protein
LOC_Os02g27890NANA2+16503874..16504341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27960Os.10048.1.S1_at10/112+16544381..16547049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24470.1.S1_at--77--6631Chr02:16515251..16515275 (25 bp)
GTTGGTGATGAGGTGCTGTAACCCT
LOC_Os02g27920
OsAffx.24470.1.S1_at--5--7771Chr02:16515254..16515278 (25 bp)
GGTGATGAGGTGCTGTAACCCTATC
LOC_Os02g27920
OsAffx.24470.1.S1_at--404--8871Chr02:16515256..16515280 (25 bp)
TGATGAGGTGCTGTAACCCTATCCC
LOC_Os02g27920
OsAffx.24470.1.S1_at--813--8871Chr02:16515259..16515283 (25 bp)
TGAGGTGCTGTAACCCTATCCCTAG
LOC_Os02g27920
OsAffx.24470.1.S1_at--429--7771Chr02:16515262..16515286 (25 bp)
GGTGCTGTAACCCTATCCCTAGCTA
LOC_Os02g27920
OsAffx.24470.1.S1_at--739--9111Chr02:16515264..16515288 (25 bp)
TGCTGTAACCCTATCCCTAGCTACA
LOC_Os02g27920
OsAffx.24470.1.S1_at--612--10131Chr02:16515275..16515299 (25 bp)
TATCCCTAGCTACACCAACGAGGAC
LOC_Os02g27920
OsAffx.24470.1.S1_at--910--9311Chr02:16515277..16515301 (25 bp)
TCCCTAGCTACACCAACGAGGACGG
LOC_Os02g27920
OsAffx.24470.1.S1_at--1036--4571Chr02:16515283..16515307 (25 bp)
GCTACACCAACGAGGACGGCCCCAA
LOC_Os02g27920
OsAffx.24470.1.S1_at--83--4531NONE
GCTCTTACCACCCAAACCATATTTA
NONE
OsAffx.24470.1.S1_at--865--10491Chr02:16516540..16516564 (25 bp)
TTCAAAAGGATTGATGGTGCCATCA
LOC_Os02g27920
Target Sequence 
GTTGGTGATGAGGTGCTGTAACCCTATCCCTAGCTACACCAACGAGGACGGCCCCAAAAACCCGGAAGCTCTTACCACCC
AAACCATATTTACCGTCAACGAGATTGAAGCCTTATATGAGCTTTTCAAAAGGATTGATGGTGCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis