Browse Element(s) Details


Os.7302.1.S1_at

Description gb:AK121829.1
DB_XREF= gi:37991452
TID=Os.7302.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099H15, full insert sequence.
FL= gb:AK073830.1 gb:AK121829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2795010/11Ataxin-2 N-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27960Os.10048.1.S1_at10/112+16544381..16547049expressed protein
LOC_Os02g27970OsAffx.12241.1.S1_at11/112+16556012..16556304hypothetical protein
LOC_Os02g27980NANA2+16562510..16562972retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7302.1.S1_at--1090--2891Chr02:16532359..16532383 (25 bp)
AAGGTTACATGCATCCTGCTGGGCC
LOC_Os02g27950
Os.7302.1.S1_at--1076--7591Chr02:16531946..16531970 (25 bp)
GGGCAGACTCGTCCTGTTTATTATT
LOC_Os02g27950
Os.7302.1.S1_at--374--3131Chr02:16531785..16531809 (25 bp)
AATTTTGAACCGCTGCCATGTTTGA
LOC_Os02g27950
Os.7302.1.S1_at--1127--5551Chr02:16531762..16531786 (25 bp)
GAAAGTTGCAGCTATACCCGTCAAA
LOC_Os02g27950
Os.7302.1.S1_at--110--9811Chr02:16531730..16531754 (25 bp)
TAACCAGACCAGACCGCTGTTGGGA
LOC_Os02g27950
Os.7302.1.S1_at--1060--7531Chr02:16531694..16531718 (25 bp)
GTGGCCATATAATCTCAAATCTCAA
LOC_Os02g27950
Os.7302.1.S1_at--1133--5931Chr02:16531643..16531667 (25 bp)
GAGCACGCCATTGTTGCACAACCTG
LOC_Os02g27950
Os.7302.1.S1_at--122--2451Chr02:16531550..16531574 (25 bp)
AAAATCGCTGGTCGTTTGTGACCCT
LOC_Os02g27950
Os.7302.1.S1_at--671--8671Chr02:16531501..16531525 (25 bp)
TGTGTGACCGTTCTCTTTTTGTAAA
LOC_Os02g27950
Os.7302.1.S1_at--609--10311Chr02:16531417..16531441 (25 bp)
TTTCTGTTTACATCACCTTTCGTGA
LOC_Os02g27950
Os.7302.1.S1_at--525--6751Chr02:16530917..16531384 (25 bp)
GTTACTTCTTGATCGTTACACCTTT
NONE
Target Sequence 
AAGGTTACATGCATCCTGCTGGGCCACAGTATGGGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCA
CCTGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTAT
ACCCGTCAAAGGGATGCTAACCAGACCAGACCGCTGTTGGGATGAAAAGAAGTGTGGCCATATAATCTCAAATCTCAAAA
CACCAACTGCGTGTTGCCAGGCCGGAGCACGCCATTGTTGCACAACCTGTGCTCAAGTCTGAAGCAGGTTAACTGGGATT
TATTATTATTTGTTTCACAGACGTGGTGTTGTAAATTAAAATCGCTGGTCGTTTGTGACCCTTGAAATGGTCGGTATTCA
TAAACGTGTGTGACCGTTCTCTTTTTGTAAAATTCGTGTTTTATTTATTTGTCTGGCAAAAGATTTGGATGGGAACGATA
NCCTTTATATTTTCTGTTTACATCACCTTTCGTGANCGGATGGCTTCNGCTTNCCNTGNCGGNCACTTGTTACTTCTTGA
TCGTTACACCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis