Browse Element(s) Details


Os.10048.1.S1_at

Description gb:AK066511.1
DB_XREF= gi:32976529
TID=Os.10048.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070L01, full insert sequence.
FL= gb:AK066511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2796010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.1.S1_at8/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.5.S1_x_at6/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.4.S1_x_at2/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27930OsAffx.31869.3.S1_s_at1/112+16521238..16522353retrotransposon protein, putative, unclassified
LOC_Os02g27940OsAffx.24466.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27940OsAffx.8338.1.S1_x_at1/112+16524879..16528194Calcineurin B-like protein 3, putative
LOC_Os02g27950Os.51622.1.S1_at11/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27950Os.7302.1.S1_at10/112+16531344..16539876Ataxin-2 N-terminal region family protein, expressed
LOC_Os02g27960Os.10048.1.S1_at10/112+16544381..16547049expressed protein
LOC_Os02g27970OsAffx.12241.1.S1_at11/112+16556012..16556304hypothetical protein
LOC_Os02g27980NANA2+16562510..16562972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27990NANA2+16569131..16569331hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10048.1.S1_at--238--6452Chr04:26039567..26039594 (23 bp)
GATCACCAAGATCAACCTCTACAAG
NONE
Os.10048.1.S1_at--601--2631Chr02:16546554..16546656 (25 bp)
AACCTCTACAAGGATGGTCGTCATG
LOC_Os02g27960
Os.10048.1.S1_at--463--6571NONE
GATTCGCTACAAGGCCGGTGTTCAA
NONE
Os.10048.1.S1_at--649--5551Chr02:16544771..16544795 (25 bp)
GAAACGCCAGTCACTGCTTAAGCTG
LOC_Os02g27960
Os.10048.1.S1_at--1062--2311Chr02:16544713..16544737 (25 bp)
AAAGTGTTTTAGATGGCTGTTGCCA
LOC_Os02g27960
Os.10048.1.S1_at--301--6691Chr02:16544695..16544719 (25 bp)
GTTGCCAGATGAACAGAGCGCCACT
LOC_Os02g27960
Os.10048.1.S1_at--1031--6691Chr02:16544657..16544681 (25 bp)
GTTCCTTTTGGTTGATCGATGATGA
LOC_Os02g27960
Os.10048.1.S1_at--68--6651Chr02:16544554..16544578 (25 bp)
GTTGTAGTCTTCTAATTCATCTTTG
LOC_Os02g27960
Os.10048.1.S1_at--373--5731Chr02:16544494..16544518 (25 bp)
GACTGATGTCCACTGGTAACACCTG
LOC_Os02g27960
Os.10048.1.S1_at--316--7031Chr02:16544479..16544503 (25 bp)
GTAACACCTGAACTTTTGGGCTGGT
LOC_Os02g27960
Os.10048.1.S1_at--637--8851Chr02:16544435..16544459 (25 bp)
TGATCGGCACATGTACTCTCTAATA
LOC_Os02g27960
Target Sequence 
GATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTG
CTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGAT
ACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTNCTTGTCTTCACTGCTGAAAGTGTTTT
AGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTG
CCAAGGTGTTTGATATCNTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTT
CTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTT
TGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis