Browse Element(s) Details


Os.19231.1.A1_s_at

Description gb:CB664426
DB_XREF= gi:29668151
DB_XREF=OSJNEd10C06.r
CLONE=OSJNEd10C06
TID=Os.19231.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19231 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2787011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein
LOC_Os02g27880OsAffx.24468.1.S1_at10/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.24466.1.S1_x_at2/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.25325.1.S1_at1/112+16495886..16501371EF hand family protein
LOC_Os02g27890NANA2+16503874..16504341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27900OsAffx.12240.1.S1_at10/112+16508771..16509758hypothetical protein
LOC_Os02g27910OsAffx.24469.1.S1_x_at1/112+16511719..16512318hypothetical protein
LOC_Os02g27920OsAffx.24470.1.S1_at10/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920Os.38751.1.A1_at6/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.24466.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.21264.1.S1_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.30280.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified
LOC_Os02g27920OsAffx.27810.1.S1_x_at1/112+16515204..16519991retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19231.1.A1_s_at--321--8591Chr02:16493047..16493071 (25 bp)
TGGTCCCAACGAAGTTCCAATGAGT
LOC_Os02g27870
Os.19231.1.A1_s_at--829--4091Chr02:16493038..16493062 (25 bp)
CGAAGTTCCAATGAGTCGCGTCACT
LOC_Os02g27870
Os.19231.1.A1_s_at--468--6691Chr02:16493034..16493058 (25 bp)
GTTCCAATGAGTCGCGTCACTCAAT
LOC_Os02g27870
Os.19231.1.A1_s_at--788--671Chr02:16493028..16493052 (25 bp)
ATGAGTCGCGTCACTCAATTAACAA
LOC_Os02g27870
Os.19231.1.A1_s_at--163--10491Chr02:16493010..16493034 (25 bp)
TTAACAACCCTAAACATGAATAGTG
LOC_Os02g27870
Os.19231.1.A1_s_at--681--5231Chr02:16492993..16493017 (25 bp)
GAATAGTGCTGACTTCACTGTTCAT
LOC_Os02g27870
Os.19231.1.A1_s_at--631--7311Chr02:16492988..16493012 (25 bp)
GTGCTGACTTCACTGTTCATAATTC
LOC_Os02g27870
Os.19231.1.A1_s_at--131--10531Chr02:16492985..16493004 (20 bp)
TTCACTGTTCATAATTCAGGATGTG
LOC_Os02g27870
Os.19231.1.A1_s_at--783--4551Chr02:16492812..16492836 (25 bp)
GCCCAATGCATGAATCCGGTATTTT
LOC_Os02g27870
Os.19231.1.A1_s_at--623--8831Chr02:16492793..16492817 (25 bp)
TATTTTTCAAGGCAACGATCGAAAT
LOC_Os02g27870
Os.19231.1.A1_s_at--1111--1871Chr02:16492779..16492803 (25 bp)
ACGATCGAAATGAGTGCGACCATGA
LOC_Os02g27870
Target Sequence 
TGGTCCCAACGAAGTTCCAATGAGTCGCGTCACTCAATTAACAACCCTAAACATGAATAGTGCTGACTTCACTGTTCATA
ATTCAGGATGTGAAAATCATTATGATCCAATCGTAACAAGTGGGAACCAAAATACCCATAGCCCAATGCATGAATCCGGT
ATTTTTCAAGGCAACGATCGAAATGAGTGCGACCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19231.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis