Browse Element(s) Details


OsAffx.16407.3.S1_s_at

Description tigr:9638.m02100
TID=OsAffx.16407.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2495411/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g2784011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16407.3.S1_s_at--10--5932Chr10:12514114..12514138 (25 bp)
GAGCATTTCAACCAGCTTTTAAGAT
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--7--6272Chr10:12514136..12514160 (25 bp)
GATGTGGATCTGTTTATGATTTCTA
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--752--6512Chr10:12514153..12514177 (25 bp)
GATTTCTATAACGTCGGGTTTGATC
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--784--5572Chr10:12514183..12514207 (25 bp)
GAAATGATCGTGCATCTAAGATTTA
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--799--7132Chr10:12514439..12514463 (25 bp)
GTCATTGGATTAGTTGTGCATGTCG
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--268--6052Chr10:12514472..12514496 (25 bp)
GAGTTCAGGAGTTTGTATTTGCGTC
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--42--372Chr10:12514511..12514535 (25 bp)
ATAATCGCGCTGGTTAATCCTAGGT
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--1149--3332Chr10:12514685..12514709 (25 bp)
CACGGACACATTTCGATTGTTTTGT
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--1075--32Chr10:12514700..12514724 (25 bp)
ATTGTTTTGTGGCTACGCTGACGAG
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--931--5932Chr10:12514827..12514847 (21 bp)
GAGCAGATGAACTATCAACTACTTA
LOC_Os10g24954
OsAffx.16407.3.S1_s_at--824--6892Chr10:12514921..12514945 (25 bp)
GTATCACCTTCTAATGTTCAAGAGC
LOC_Os10g24954
Target Sequence 
GAGCATTTCAACCAGCTTTTAAGATGTGGATCTGTTTATGATTTCTATAACGTCGGGTTTGATCCGACAGAAATGATCGT
GCATCTAAGATTTAAGATAAGATCTCAGTTCTGCATGATTCTCAATAATGTAACAACTACCCGCACGCCTCATGATGTCA
TTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCAGACGCCGACAAGGATAATCGCGCTG
GTTAATCCTAGGTTGCAGATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACTTGACTAGGTGGCGCTCAGC
ACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAACTATCAACTACTTATGAGT
CTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGCATTAGCAGTATCACCTTCT
AATGTTCAAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16407.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis