Browse Element(s) Details


Os.50367.1.A1_at

Description gb:AK120894.1
DB_XREF= gi:37990517
TID=Os.50367.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029O16, full insert sequence.
FL= gb:AK120894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2494011/11expressed protein
LOC_Os07g151606/11expressed protein
LOC_Os02g278505/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24900Os.46545.2.S1_x_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24900Os.46545.1.S1_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50367.1.A1_at--468--1552Chr10:12511930..12511954 (25 bp)
AGCATTGTAGGCGTGTGCAAGAAAT
LOC_Os10g24940
Os.50367.1.A1_at--24--9073Chr10:12511965..12511989 (25 bp)
TGCATCTAGCACAAATTTCCTTCCT
LOC_Os10g24940
Os.50367.1.A1_at--124--213Chr10:12511979..12512003 (25 bp)
ATTTCCTTCCTGATGAACATTCATT
LOC_Os10g24940
Os.50367.1.A1_at--486--9854Chr12:17814288..17814308 (21 bp)
TACAATTCCATTTCAATCGCCATAT
NONE
Os.50367.1.A1_at--1016--532Chr10:12512050..12512074 (25 bp)
ATCGCCATATAGGACTTCTTTGGAG
LOC_Os10g24940
Os.50367.1.A1_at--521--7151Chr10:12512113..12512137 (25 bp)
GTCTTATGTTCCAAACAAGCCCTGA
LOC_Os10g24940
Os.50367.1.A1_at--162--3251Chr10:12512128..12512152 (25 bp)
CAAGCCCTGAAGCTAACAGATGGCA
LOC_Os10g24940
Os.50367.1.A1_at--931--7392Chr10:12512158..12512182 (25 bp)
GTGATGTGAACTTTGTGCGGTGAAA
LOC_Os10g24940
Os.50367.1.A1_at--95--9151Chr10:12512173..12512197 (25 bp)
TGCGGTGAAAGCAACCTGGAGCCTT
LOC_Os10g24940
Os.50367.1.A1_at--458--3911Chr10:12512188..12512212 (25 bp)
CTGGAGCCTTTCATCTGCATATGTA
LOC_Os10g24940
Os.50367.1.A1_at--884--6373Chr10:12512228..12512252 (25 bp)
GATCGAACCCATTTATGCCTTTTGA
LOC_Os10g24940
Target Sequence 
AGCATTGTAGGCGTGTGCAAGAAATGGTGAAGGGATGCATCTAGCACAAATTTCCTTCCTGATGAACATTCATTGTTAAC
AGTAGGTAATTGTATAAAATTAACTTACAATTCCATTTCAATCGCCATATAGGACTTCTTTGGAGAGGAGGAAGTTTACT
ATATTTGAACAAATTTTTGTAAAGTCTTATGTTCCAAACAAGCCCTGAAGCTAACAGATGGCAAGTATGTGATGTGAACT
TTGTGCGGTGAAAGCAACCTGGAGCCTTTCATCTGCATATGTAGCTGTTGATTTTATAGATCGAACCCATTTATGCCTTT
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50367.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis