Browse Element(s) Details


Os.46545.1.S1_at

Description gb:AK065918.1
DB_XREF= gi:32975936
TID=Os.46545.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein (OSJNBa0094J09.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049C12, full insert sequence.
FL= gb:AK065918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2490011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein
LOC_Os10g24900Os.46545.2.S1_x_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24900Os.46545.1.S1_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46545.1.S1_at--882--7931Chr10:12484667..12484691 (25 bp)
GGATTTAGCCTCATTCAACGTTGCT
LOC_Os10g24900
Os.46545.1.S1_at--606--3531Chr10:12484640..12484664 (25 bp)
CATGCTGGTATCTTACTGTTGCTGA
LOC_Os10g24900
Os.46545.1.S1_at--666--6491Chr10:12484601..12484625 (25 bp)
GATAGCTTTTAATGGTTCTGCCTTT
LOC_Os10g24900
Os.46545.1.S1_at--758--9771Chr10:12484592..12484616 (25 bp)
TAATGGTTCTGCCTTTCGTTTTATT
LOC_Os10g24900
Os.46545.1.S1_at--480--171Chr10:12484539..12484563 (25 bp)
ATTTTGAATTGCCTGTTGTATTGAG
LOC_Os10g24900
Os.46545.1.S1_at--458--271Chr10:12484509..12484533 (25 bp)
ATATGTTGGTCATGGTTCAATGCTA
LOC_Os10g24900
Os.46545.1.S1_at--312--7891Chr10:12484496..12484520 (25 bp)
GGTTCAATGCTAGATTACCAGTCAT
LOC_Os10g24900
Os.46545.1.S1_at--569--6551Chr10:12484484..12484508 (25 bp)
GATTACCAGTCATATCCTGTATTTA
LOC_Os10g24900
Os.46545.1.S1_at--922--6391Chr10:12484448..12484472 (25 bp)
GATCTGGATCCAAACGTAGTACTTT
LOC_Os10g24900
Os.46545.1.S1_at--356--51Chr10:12484410..12484434 (25 bp)
ATTGTATCATCCTTGCAACTCTGTC
LOC_Os10g24900
Os.46545.1.S1_at--770--5151Chr10:12484396..12484420 (25 bp)
GCAACTCTGTCCTGGATGTGAAGTT
LOC_Os10g24900
Target Sequence 
GGATTTAGCCTCATTCAACGTTGCTCCCATGCTGGTATCTTACTGTTGCTGAAGGGNAAGATTGCAGATAGCTTTTAATG
GTTCTGCCTTTCGTTTTATTTGAAAAGAAGTCTGTTAATTATTGTTCAATTTTGAATTGCCTGTTGTATTGAGGACATAT
ATGTTGGTCATGGTTCAATGCTAGATTACCAGTCATATCCTGTATTTATCTTGAATTTGGATCTGGATCCAAACGTAGTA
CTTTATGNGCATTTGTAATTGTATCATCCTTGCAACTCTGTCCTGGATGTGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis