Browse Element(s) Details


Os.46545.2.S1_x_at

Description gb:NM_196266.1
DB_XREF= gi:37533891
TID=Os.46545.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46545 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein (OSJNBa0094J09.17), mRNA.
PROD=putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2490011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24890OsAffx.20394.3.S1_at11/1110+12462669..12463718hypothetical protein
LOC_Os10g24900Os.46545.2.S1_x_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24900Os.46545.1.S1_at11/1110+12484345..12487465Kelch motif family protein, expressed
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46545.2.S1_x_at--620--2991Chr10:12485248..12485272 (25 bp)
AATGTTTGCCTGTTGTGCACTGGAT
LOC_Os10g24900
Os.46545.2.S1_x_at--621--10351Chr10:12485162..12485186 (25 bp)
TTTATAACCCTGAAGCTGACACGTG
LOC_Os10g24900
Os.46545.2.S1_x_at--1088--9931Chr10:12485120..12485144 (25 bp)
TACGTCAAGCACACAGCTCTGCATG
LOC_Os10g24900
Os.46545.2.S1_x_at--853--9471Chr10:12485103..12485127 (25 bp)
TCTGCATGCTCTGGACTTGTCATAA
LOC_Os10g24900
Os.46545.2.S1_x_at--700--4991Chr10:12485068..12485092 (25 bp)
GCATGTATTGCACAAAGGCCTACCA
LOC_Os10g24900
Os.46545.2.S1_x_at--132--891Chr10:12485053..12485077 (25 bp)
AGGCCTACCAACAGTGCAGATTCTT
LOC_Os10g24900
Os.46545.2.S1_x_at--765--631Chr10:12485018..12485042 (25 bp)
ATGCTTGGGCTGTTGAGGACTACTC
LOC_Os10g24900
Os.46545.2.S1_x_at--1018--6171Chr10:12485004..12485028 (25 bp)
GAGGACTACTCTTGGCTGCAAGGTC
LOC_Os10g24900
Os.46545.2.S1_x_at--619--5391Chr10:12484927..12484951 (25 bp)
GAAGCAGCGTGGTGTGAATTTCCCT
LOC_Os10g24900
Os.46545.2.S1_x_at--337--7751Chr10:12484894..12484918 (25 bp)
GGTGTCGTGTGCATCTGAATTCCAA
LOC_Os10g24900
Os.46545.2.S1_x_at--427--8311Chr10:12484727..12484751 (25 bp)
GGCTACCAGGATCACCAATGACACA
LOC_Os10g24900
Target Sequence 
AATGTTTGCCTGTTGTGCACTGGATGGGAACATAATTGTTGCTGGGGGCTTCACAAATTGCCGCAAATCAATATCAAAGG
CTGAGATTTATAACCCTGAAGCTGACACGTGGGAGCCTCTCCCTGACCTACGTCAAGCACACAGCTCTGCATGCTCTGGA
CTTGTCATAAAGGGTAAGATGCATGTATTGCACAAAGGCCTACCAACAGTGCAGATTCTTGAAGATGGCAATGCTTGGGC
TGTTGAGGACTACTCTTGGCTGCAAGGTCCGATGGCAATGGTTCGTGGGGAGCTTTATGTGCTGAGCAATAGTTGCATTA
TGAAGCAGCGTGGTGTGAATTTCCCTGATAAGATGGTGTCGTGTGCATCTGAATTCCAAAGCAGGATAGGTTTTGGGATG
ATTGGTTTGGGAGACAACATATATCTGGTTGGTGGAGTAATTGGACCTGGGCCAAGAAATCAGTGCATCAAGCCACTATC
TGATGTTGATATCTTGAATGTTACTAGTGAGAGACCAACCTGGCTACCAGGATCACCAATGACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46545.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis