Browse Element(s) Details


Os.46303.1.S1_x_at

Description gb:NM_196269.1
DB_XREF= gi:37533897
TID=Os.46303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0094J09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2495410/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g278303/11hypothetical protein
LOC_Os02g225902/11expressed protein
LOC_Os07g256501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46303.1.S1_x_at--484--6571Chr10:12520017..12520041 (25 bp)
GATTCGGCTGAAAATTGTACACTGG
LOC_Os10g24954
Os.46303.1.S1_x_at--339--5551Chr10:12520067..12520091 (25 bp)
GAAACGTCACTTAACGTGCCTTCTC
LOC_Os10g24954
Os.46303.1.S1_x_at--851--10491Chr10:12520077..12520101 (25 bp)
TTAACGTGCCTTCTCTCTGGAGATA
LOC_Os10g24954
Os.46303.1.S1_x_at--389--2433Chr10:12520272..12520296 (25 bp)
AAAACCCGTTTCTTTCTGACATGCT
LOC_Os10g24954
Os.46303.1.S1_x_at--420--8991Chr10:12520356..12520380 (25 bp)
TGAAGAATTACCTACACCATGAACT
LOC_Os10g24954
Os.46303.1.S1_x_at--770--1692Chr10:12520371..12520764 (25 bp)
ACCATGAACTGGACTTGCCTAGCCA
LOC_Os10g24954
Os.46303.1.S1_x_at--960--5832Chr10:12520775..12520799 (25 bp)
GACCTCAATGTTATCAAGTGGCCAA
LOC_Os10g24954
Os.46303.1.S1_x_at--609--7653Chr10:12521488..12521512 (25 bp)
GGGTACAAAGTTCAAGGCCGCACTA
LOC_Os10g24954
Os.46303.1.S1_x_at--518--4512Chr10:12521504..12521528 (25 bp)
GCCGCACTATATTAGCTTGAGTCTC
LOC_Os10g24954
Os.46303.1.S1_x_at--411--1553Chr10:12521517..12521541 (25 bp)
AGCTTGAGTCTCAAACAGCTTCAAA
LOC_Os10g24954
Os.46303.1.S1_x_at--1037--9691NONE
TCAACATGGCTATTCCTATGAGAAA
NONE
Target Sequence 
GATTCGGCTGAAAATTGTACACTGGTGGACATGGGTCATTTTTATAACAAGAAACGTCACTTAACGTGCCTTCTCTCTGG
AGATAAATTTTTGAACGATGATGTCATCAGTGCGTACATACACTGTTTGAGTGAGCAAGCAAATAACGATAAGAAAGTGA
AATATGAAAACCCGTTTCTTTCTGACATGCTGAAAGCGGCTGGGGTCAATGGAGTAAATGAAGATGAAGATAACTTTATT
ACAAAGATAGTGAAGAATTACCTACACCATGAACTGGACTTGCCTAGCCACAAATGGGGTGACCTCAATGTTATCAAGTG
GCCAATAATAGAACAACTAAAAGAAAGAATTCAGGAAGACAGGAAAATATGGGTACAAAGTTCAAGGCCGCACTATATTA
GCTTGAGTCTCAAACAGCTTCAAACAATACTAAAGAAGGATGAGCCATTGGAAAGTGATTGCTTCAACATGGCTATTCCT
ATGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46303.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis