Browse Element(s) Details

Os.27026.1.A1_x_at

Description

gb:CB634585
DB_XREF= gi:29629576
DB_XREF=OSIIEb14D04.r
CLONE=OSIIEb14D04
TID=Os.27026.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.30 (OJ1714_H10.30), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g24954	10/11	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g27830	7/11	hypothetical protein
LOC_Os07g15150	3/11	transposon protein, putative, CACTA, En/Spm sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g24910	Os.46012.2.S1_x_at	3/11	10	+	12490340..12495081	retrotransposon protein, putative, unclassified
LOC_Os10g24910	Os.46012.3.S1_x_at	2/11	10	+	12490340..12495081	retrotransposon protein, putative, unclassified
LOC_Os10g24910	Os.27088.1.A1_x_at	1/11	10	+	12490340..12495081	retrotransposon protein, putative, unclassified
LOC_Os10g24920	NA	NA	10	+	12496633..12500980	retrotransposon, putative, centromere-specific
LOC_Os10g24940	Os.50367.1.A1_at	11/11	10	+	12502939..12512359	expressed protein
LOC_Os10g24940	Os.51229.1.S1_at	5/11	10	+	12502939..12512359	expressed protein
LOC_Os10g24940	Os.38268.3.S1_x_at	2/11	10	+	12502939..12512359	expressed protein
LOC_Os10g24940	Os.54892.1.S1_at	1/11	10	+	12502939..12512359	expressed protein
LOC_Os10g24940	Os.7388.2.S1_x_at	1/11	10	+	12502939..12512359	expressed protein
LOC_Os10g24954	OsAffx.16407.3.S1_s_at	11/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954	OsAffx.16407.3.S1_at	11/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954	Os.27026.1.A1_x_at	10/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954	Os.46303.1.S1_x_at	10/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954	OsAffx.16407.2.S1_x_at	6/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954	Os.46303.1.S1_at	2/11	10	+	12513601..12522495	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970	OsAffx.18389.1.S1_at	11/11	10	+	12523918..12524400	hypothetical protein
LOC_Os10g24980	OsAffx.17094.1.S1_at	1/11	10	+	12526544..12528991	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980	OsAffx.25548.1.S1_at	1/11	10	+	12526544..12528991	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980	OsAffx.17842.1.S1_at	1/11	10	+	12526544..12528991	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000	Os.54065.1.S1_at	10/11	10	+	12536568..12538535	expressed protein
LOC_Os10g25010	Os.50669.1.S1_at	11/11	10	+	12539503..12542703	Caltractin, putative, expressed
LOC_Os10g25010	Os.11064.1.S1_a_at	11/11	10	+	12539503..12542703	Caltractin, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27026.1.A1_x_at--1017--481	2	Chr10:12522047..12522071 (25 bp)	GCTCTATGTGTTAGACCCAAATCCA	LOC_Os10g24954
Os.27026.1.A1_x_at--383--647	5	Chr10:12522122..12522146 (25 bp)	GATAACTATTTGTGATCACTTCAAC	LOC_Os10g24954
Os.27026.1.A1_x_at--1093--739	4	Chr10:12522133..12522157 (25 bp)	GTGATCACTTCAACAAAGCTATGAG	LOC_Os10g24954
Os.27026.1.A1_x_at--431--329	3	Chr10:12522146..12522170 (25 bp)	CAAAGCTATGAGAAAGGCATGCCCT	LOC_Os10g24954
Os.27026.1.A1_x_at--917--855	3	Chr10:12522201..12522225 (25 bp)	TGGAGGCAAGTAATTGTCAATAATC	LOC_Os10g24954
Os.27026.1.A1_x_at--790--707	4	Chr10:12522216..12522239 (24 bp)	GTCAATAATCCGGTTTACAGCAGGA	LOC_Os10g24954
Os.27026.1.A1_x_at--981--337	4	Chr10:12522320..12522340 (21 bp)	CAGCAGGAGTTTATCGGGTTTTCTT	LOC_Os10g24954
Os.27026.1.A1_x_at--1009--681	4	Chr10:12522324..12522348 (25 bp)	GTTTATCGGGTTTTCTTGTTCATCT	LOC_Os10g24954
Os.27026.1.A1_x_at--405--941	3	Chr10:12522329..12522353 (25 bp)	TCGGGTTTTCTTGTTCATCTCTTCA	LOC_Os10g24954
Os.27026.1.A1_x_at--111--919	2	Chr10:12522384..12522490 (25 bp)	TGCCGGCAATTAATGATGGTGACGA	LOC_Os10g24954
Os.27026.1.A1_x_at--835--69	1	NONE	ATGATGGTGACGAGCTAAGGAAACT	NONE

Target Sequence

GCTCTATGTGTTAGACCCAAATCCACTTATGCCAGAATATAAAAATAACCCAAATATGAGATNCACCAGAAAACTGATAA
CTATTTGTGATCACTTCAACAAAGCTATGAGAAAGGCATGCCCTNGCTCTAGGTGGAATGAAGNCATCAACTTGTGGAGG
CAAGTAATTGTCAATAATCCGGTTTACAGCAGGAGTTTATCGGGTTTTCTTGTTCATCTCTTCATGTGTNCATGGAATAA
TAAAGANCCACATTTGCCGGCAATTAATGATGGTGACGAGCTAAGGAAACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis