Browse Element(s) Details


Os.14861.2.S1_at

Description gb:AK063841.1
DB_XREF= gi:32973859
TID=Os.14861.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-C01, full insert sequence.
FL= gb:AK073367.1 gb:AK063841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4588011/11expressed protein
LOC_Os02g278509/11expressed protein
LOC_Os12g181304/11expressed protein
LOC_Os01g722401/11Uridine 5'-monophosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0004588molecular_functionorotate phosphoribosyltransferase activity
GO:0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14861.2.S1_at--756--4952Chr02:16483571..16483595 (25 bp)
GCATTTCTTGTAATCATGTTGTGGC
LOC_Os02g27850
Os.14861.2.S1_at--109--8752Chr02:16483563..16483587 (25 bp)
TGTAATCATGTTGTGGCAGTCCAGT
LOC_Os02g27850
Os.14861.2.S1_at--293--732Chr02:16483556..16483580 (25 bp)
ATGTTGTGGCAGTCCAGTTTCCAGT
LOC_Os02g27850
Os.14861.2.S1_at--660--10813Chr12:10453239..10453747 (25 bp)
TTGTGGCAGTCCAGTTTCCAGTGGG
LOC_Os12g18130
Os.14861.2.S1_at--111--7691Chr01:26388247..26388271 (25 bp)
GGGTACTGAATAACACTTGAGTGGA
LOC_Os01g45880
Os.14861.2.S1_at--71--2192Chr02:16483517..16483540 (24 bp)
ACACTTGAGTGGAGATCATCTGAAC
LOC_Os02g27850
Os.14861.2.S1_at--177--6052Chr02:16483506..16483530 (25 bp)
GAGATCATCTGAACTGAAAGCCAAC
LOC_Os02g27850
Os.14861.2.S1_at--733--5553Chr12:10453177..10453201 (25 bp)
GAAAGCCAACATTTGAGCTCATGCT
LOC_Os12g18130
Os.14861.2.S1_at--1024--4394Chr01:42216736..42216755 (20 bp)
GCCAACATTTGAGCTCATGCTATTA
LOC_Os01g72240
Os.14861.2.S1_at--608--213Chr12:10453167..10453191 (25 bp)
ATTTGAGCTCATGCTATTAGCCTAT
LOC_Os12g18130
Os.14861.2.S1_at--993--4871Chr01:26388187..26388211 (25 bp)
GCTATTAGCCTATTACTATATCAAA
LOC_Os01g45880
Target Sequence 
GCATTTCTTGTAATCATGTTGTGGCAGTCCAGTTTCCAGTGGGGTACTGAATAACACTTGAGTGGAGATCATCTGAACTG
AAAGCCAACATTTGAGCTCATGCTATTAGCCTATTACTATATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14861.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis