Browse Element(s) Details


Os.41557.1.S1_at

Description gb:AY464568.1
DB_XREF= gi:39841618
TID=Os.41557.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41557 (NCBI UniGene Cluster)
DEF=Oryza sativa GAI protein mRNA, complete cds.
PROD=GAI protein
FL= gb:AY464568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4586011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41557.1.S1_at--1114--511Chr01:26371646..26371670 (25 bp)
ATCGACGCCGTTCTCGACTGTGTCG
LOC_Os01g45860
Os.41557.1.S1_at--474--2811Chr01:26371607..26371631 (25 bp)
AAGATCTTCACGGTCATCGAGCAAG
LOC_Os01g45860
Os.41557.1.S1_at--1017--3331Chr01:26371599..26371623 (25 bp)
CACGGTCATCGAGCAAGAGGCCGAC
LOC_Os01g45860
Os.41557.1.S1_at--1008--2451Chr01:26371571..26371595 (25 bp)
AACAAGACGGGCTTCCTCGACAGGT
LOC_Os01g45860
Os.41557.1.S1_at--428--2131Chr01:26371552..26371576 (25 bp)
ACAGGTTCACGGAGGCGCTGTTCTA
LOC_Os01g45860
Os.41557.1.S1_at--824--8791Chr01:26371534..26371558 (25 bp)
TGTTCTACTACTCCGCGGTGTTCGA
LOC_Os01g45860
Os.41557.1.S1_at--931--1991Chr01:26371525..26371549 (25 bp)
ACTCCGCGGTGTTCGACTCGCTGGA
LOC_Os01g45860
Os.41557.1.S1_at--895--891Chr01:26371459..26371483 (25 bp)
AGGCGTACCTCCAGAGGGAGATCTG
LOC_Os01g45860
Os.41557.1.S1_at--360--7291Chr01:26371340..26371364 (25 bp)
GTGCCGCTCGGTTCGAACGCGCTGC
LOC_Os01g45860
Os.41557.1.S1_at--420--2491Chr01:26371157..26371181 (25 bp)
AACAGCAACGTTAGCGGTAGCAGCG
LOC_Os01g45860
Os.41557.1.S1_at--706--5071Chr01:26371138..26371162 (25 bp)
GCAGCGGCAGTGACAGTAACAACAG
LOC_Os01g45860
Target Sequence 
ATCGACGCCGTTCTCGACTGTGTCGCCTCCGTCCGGCCCAAGATCTTCACGGTCATCGAGCAAGAGGCCGACCACAACAA
GACGGGCTTCCTCGACAGGTTCACGGAGGCGCTGTTCTACTACTCCGCGGTGTTCGACTCGCTGGACGCGGCGAGCGCCA
GCGGCGGCGCGGGCAACGCGATGGCGGAGGCGTACCTCCAGAGGGAGATCTGCGACATCGTGTGCGGGGAGGGCGCCGCC
CGGAGGGAACGGCACGAGCCGCTGTCTCGGTGGCGGGACAGGCTCACGCGCGCCGGCCTGAGCGCCGTGCCGCTCGGTTC
GAACGCGCTGCGGCAGGCGAGGATGCTGGTCGGGCTGTTCTCCGGCGAGGGGCACAGCGTCGAGGAGGCCGACGGGTGCC
TCACCCTCGGCTGGCACGGGCGGCCGCTGTTCTCGGCGTCCGCCTGGGAAGCCGCCGGGGACGGCGGCGGCGACAATAAC
AACAACAGTAACAGCAACGTTAGCGGTAGCAGCGGCAGTGACAGTAACAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis