Browse Element(s) Details


Os.33341.2.S1_x_at

Description gb:AK120646.1
DB_XREF= gi:37990269
TID=Os.33341.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.27 (P0707D10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155H06, full insert sequence.
FL= gb:AK120646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g458306/11Sulfate transporter, putative, expressed
LOC_Os08g263101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45840OsAffx.2243.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_at11/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45840Os.55689.1.S1_x_at10/111+26363490..26366006pentatricopeptide, putative, expressed
LOC_Os01g45850NANA1+26369922..26370377hypothetical protein
LOC_Os01g45860Os.41557.1.S1_at11/111+26371080..26372561GRAS family transcription factor containing protein, expressed
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33341.2.S1_x_at--218--1731Chr01:26361507..26361531 (25 bp)
ACCATACGGCTCAAGACGTCGGTGT
LOC_Os01g45830
Os.33341.2.S1_x_at--202--7731Chr01:26361463..26361487 (25 bp)
GGTGGGCGATCTGGGCACCTACATC
LOC_Os01g45830
Os.33341.2.S1_x_at--991--1271Chr01:26361050..26361290 (25 bp)
AGATCATGTCCGCTGGCCTTGTCCT
LOC_Os01g45830
Os.33341.2.S1_x_at--820--9331Chr01:26361020..26361044 (25 bp)
TCGCCGCGCTACTGTTCATAATCCT
LOC_Os01g45830
Os.33341.2.S1_x_at--1147--9911Chr01:26361011..26361035 (25 bp)
TACTGTTCATAATCCTCGCCACCGG
LOC_Os01g45830
Os.33341.2.S1_x_at--486--1871Chr01:26360975..26360999 (25 bp)
ACGAGGACGTCAACAGGGACGGCAC
LOC_Os01g45830
Os.33341.2.S1_x_at--502--5451Chr09:10748541..10748565 (25 bp)
GAACGGGAGCGGAAGCAAAACTCTT
NONE
Os.33341.2.S1_x_at--378--4691Chr09:10748533..10748557 (25 bp)
GCGGAAGCAAAACTCTTGTGTTCAT
NONE
Os.33341.2.S1_x_at--627--2014Chr08:15916382..15916404 (22 bp)
ACTCTTGTGTTCATGTGTGTTCTTT
LOC_Os08g26310
Os.33341.2.S1_x_at--537--791Chr09:10748510..10748534 (25 bp)
ATGTGTGTTCTTTTGTTCATCTTTT
NONE
Os.33341.2.S1_x_at--1149--9752Chr04:24498397..24498421 (25 bp)
TAATGGATTTGTGCGAATTTTATTC
NONE
Target Sequence 
ACCATACGGCTCAAGACGTCGGTGTGGTCGGAGCTGGGCGGCGCGGTGGGCGATCTGGGCACCTACATCCCCATCGTGCT
GGCGCTGTCGCTCGCGTCCCACCTCGACCTCGGCACCACGCTCATCTTCACCGCGCTCTACAACTTCGCCACCGGGCTCC
TCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCGCTCTCCTCCGCGCACCTCACCATCCCG
CAGATCATGTCCGCTGGCCTTGTCCTCGCGCTCGCCGCGCTACTGTTCATAATCCTCGCCACCGGCTCCGGCGACGACGA
GGACGTCAACAGGGACGGCACGGCCCGGCGGCGGCGAACGGGAGCGGAAGCAAAACTCTTGTGTTCATGTGTGTTCTTTT
GTTCATCTTTTGTGTTCATGTTGTGTTCTTGAAGTGAAAGTGAAATTGCTTGATGAGTAATGGATTTGTGCGAATTTTAT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33341.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis