Browse Element(s) Details


Os.33110.1.S1_at

Description gb:AK061541.1
DB_XREF= gi:32971559
TID=Os.33110.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.35 (P0707D10.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G10, full insert sequence.
FL= gb:AK061541.1 gb:AK101723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4590011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45870OsAffx.2244.1.S1_at11/111+26383702..26383985hypothetical protein
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33110.1.S1_at--483--5671Chr01:26403179..26403203 (25 bp)
GACATCGTGTGGCTGTCGTACGACC
LOC_Os01g45900
Os.33110.1.S1_at--761--6591Chr01:26403409..26403433 (25 bp)
GATTGTTAGGCCCAACGTGGCAATG
LOC_Os01g45900
Os.33110.1.S1_at--701--2931Chr01:26403430..26403454 (25 bp)
AATGGGCCCCGCACCCGTGTAAGTG
LOC_Os01g45900
Os.33110.1.S1_at--1061--4951Chr01:26403488..26403512 (25 bp)
GCATAATGCGACATGATCTTGCACA
LOC_Os01g45900
Os.33110.1.S1_at--127--431Chr01:26403503..26403527 (25 bp)
ATCTTGCACAATGGCTTCTCCGATG
LOC_Os01g45900
Os.33110.1.S1_at--1094--10571Chr01:26403518..26403542 (25 bp)
TTCTCCGATGGCGACAAATCGTCGA
LOC_Os01g45900
Os.33110.1.S1_at--148--9931Chr01:26403577..26403601 (25 bp)
TACTGGCGTGCGTGCAAGCACTCTT
LOC_Os01g45900
Os.33110.1.S1_at--234--2731Chr01:26403592..26403616 (25 bp)
AAGCACTCTTCTCTATAGTTCTCTT
LOC_Os01g45900
Os.33110.1.S1_at--494--1971Chr01:26403625..26403649 (25 bp)
ACTGTTCATTGTTCATAAGCCGTGT
LOC_Os01g45900
Os.33110.1.S1_at--231--2671Chr01:26403641..26403665 (25 bp)
AAGCCGTGTGAGTGTAGCTTTGTGT
LOC_Os01g45900
Os.33110.1.S1_at--16--2331Chr01:26403689..26403713 (25 bp)
AAAGGGCAGGCTGGTACTCTGTTCT
LOC_Os01g45900
Target Sequence 
GACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCT
CAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCA
CCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGG
CCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGA
CATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTA
CTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGC
TTTGTGTTCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis