Browse Element(s) Details


OsAffx.10528.1.S1_x_at

Description gb:NM_184576.1
DB_XREF= gi:34896241
GEN=OSJNBb0008D07.11
TID=OsAffx.10528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0008D07.11 (OSJNBb0008D07.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g265101/11retrotransposon protein, putative, unclassified
LOC_Os06g284601/11retrotransposon protein, putative, unclassified
LOC_Os08g225201/11hypothetical protein
LOC_Os11g281841/11expressed protein
LOC_Os03g417801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g278201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26450Os.27088.1.A1_x_at1/118+15981234..15986207retrotransposon protein, putative, unclassified
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0019722biological_processcalcium-mediated signaling
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10528.1.S1_x_at--1074--9531NONE
TCTAGACTAAAAGCGACATATGGGA
NONE
OsAffx.10528.1.S1_x_at--70--4111Chr01:16639758..16639782 (25 bp)
CGACATATGGGAACAGCGGGTTGCC
NONE
OsAffx.10528.1.S1_x_at--917--54978Chr12:11649048..11649072 (25 bp)
GAACAGCGGGTTGCCAGTGCCTGAA
NONE
OsAffx.10528.1.S1_x_at--421--1113Chr02:15254972..15255350 (25 bp)
AGTGCCTGAAGTATTGCCGCCGCCG
NONE
OsAffx.10528.1.S1_x_at--810--9112Chr01:16641968..16641992 (25 bp)
TGCTGCTCGGCTGCAGGCTGCTAGC
NONE
OsAffx.10528.1.S1_x_at--897--4291Chr01:16642034..16642058 (25 bp)
CCTCAGCAGTGCAGGCTGCGTGTAG
NONE
OsAffx.10528.1.S1_x_at--905--1115Chr01:16642041..16642065 (25 bp)
AGTGCAGGCTGCGTGTAGCACTGCA
NONE
OsAffx.10528.1.S1_x_at--816--10012Chr01:16642056..16642080 (25 bp)
TAGCACTGCAGCGTGCTCTACTGCT
NONE
OsAffx.10528.1.S1_x_at--61--3772Chr01:16642079..16642099 (21 bp)
CTCTATGCTTGCTGTATGCCTCTGA
NONE
OsAffx.10528.1.S1_x_at--1122--631NONE
ATGCTTGCTGTATGCCTCTGAGCTC
NONE
OsAffx.10528.1.S1_x_at--1115--3591NONE
CTTGCTGTATGCCTCTGAGCTCCCA
NONE
Target Sequence 
TCTAGACTAAAAGCGACATATGGGAACAGCGGGTTGCCAGTGCCTGAAGTATTGCCGCCGCCGCTGCTGCTCGGCTGCAG
GCTGCTAGCGCCGCCGCCAACTGCAGGCTACAAGCGCCGCCGCCGCTCCTCCTCAGCAGTGCAGGCTGCGTGTAGCACTG
CAGCGTGCTCTACTGCTCTATGCTTGCTGTATGCCTCTGAGCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10528.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis