Browse Element(s) Details


OsAffx.5936.1.S1_at

Description tigr:9636.m02608
TID=OsAffx.5936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2646011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26420OsAffx.29368.1.S1_at11/118+15962934..15964091hypothetical protein
LOC_Os08g26430OsAffx.29313.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26430Os.14919.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26440OsAffx.19677.2.S1_x_at11/118+15978151..15978477hypothetical protein
LOC_Os08g26440OsAffx.19677.2.S1_s_at9/118+15978151..15978477hypothetical protein
LOC_Os08g26450Os.27088.1.A1_x_at1/118+15981234..15986207retrotransposon protein, putative, unclassified
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5936.1.S1_at--15--8351Chr08:15988320..15988344 (25 bp)
GGCGGAGACCCGCAACATCCTAAAG
LOC_Os08g26460
OsAffx.5936.1.S1_at--124--2511Chr08:15988307..15988331 (25 bp)
AACATCCTAAAGTCGGCCAGTCTGC
LOC_Os08g26460
OsAffx.5936.1.S1_at--727--1151Chr08:15988289..15988313 (25 bp)
AGTCTGCAAGCCTCCATGTCCATGT
LOC_Os08g26460
OsAffx.5936.1.S1_at--758--4331Chr08:15988276..15988300 (25 bp)
CCATGTCCATGTCGAAGAGCCTACA
LOC_Os08g26460
OsAffx.5936.1.S1_at--49--5871Chr08:15988260..15988284 (25 bp)
GAGCCTACATGGAGCGATGAGCACT
LOC_Os08g26460
OsAffx.5936.1.S1_at--609--691Chr08:15988244..15988268 (25 bp)
ATGAGCACTACAGCCGTGGACGGGT
LOC_Os08g26460
OsAffx.5936.1.S1_at--888--7671Chr08:15988223..15988247 (25 bp)
GGGTTCCAAGCGTGCGCCGGAACAC
LOC_Os08g26460
OsAffx.5936.1.S1_at--371--1811Chr08:15988200..15988224 (25 bp)
ACCCACGAGATCCAGCGAGACTTTG
LOC_Os08g26460
OsAffx.5936.1.S1_at--254--6371Chr08:15988192..15988216 (25 bp)
GATCCAGCGAGACTTTGAACGGCAA
LOC_Os08g26460
OsAffx.5936.1.S1_at--787--7491Chr08:15988023..15988047 (25 bp)
GTGGTGCACCGAGAACCGGCACATT
LOC_Os08g26460
OsAffx.5936.1.S1_at--411--1791Chr08:15988016..15988040 (25 bp)
ACCGAGAACCGGCACATTGGTATGT
LOC_Os08g26460
Target Sequence 
GGCGGAGACCCGCAACATCCTAAAGTCGGCCAGTCTGCAAGCCTCCATGTCCATGTCGAAGAGCCTACATGGAGCGATGA
GCACTACAGCCGTGGACGGGTTCCAAGCGTGCGCCGGAACACCCACGAGATCCAGCGAGACTTTGAACGGCAAGGAGAAA
GCCGTCGCCGTCGCCTGCCGCGTCCATGGCCAGAGGAGGAGCTGCTGGGAGGAGGCCGCCGGGATCGGGGAGCGCGCGAG
GGCGAGGTCCCTGTCGTCGGAGTTGGAGAAGATGAAGAGGAAATGTTCGGGGAGCGCGTGGTGCACCGAGAACCGGCACA
TTGGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis