Browse Element(s) Details


Os.50824.1.S1_x_at

Description gb:AK058799.1
DB_XREF= gi:32968817
TID=Os.50824.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H12, full insert sequence.
FL= gb:AK058799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g265208/11hypothetical protein
LOC_Os08g263503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50824.1.S1_x_at--945--7191Chr08:16013167..16013322 (25 bp)
GTCGTACGGATCAGGATTCATAACT
LOC_Os08g26520
Os.50824.1.S1_x_at--710--9631Chr08:16013157..16013180 (24 bp)
TCAGGATTCATAACTCTGTGCCTCC
LOC_Os08g26520
Os.50824.1.S1_x_at--286--2851Chr08:16012802..16012826 (25 bp)
AAGTCCAAGACTGCAGACCAGTTCT
LOC_Os08g26520
Os.50824.1.S1_x_at--684--5851Chr08:16012787..16012811 (25 bp)
GACCAGTTCTCCTACTACTATAACA
LOC_Os08g26520
Os.50824.1.S1_x_at--494--2152Chr08:16012765..16012789 (25 bp)
ACAGCATAAGCAGCGGCCAAGGCCA
LOC_Os08g26520
Os.50824.1.S1_x_at--392--3893Chr08:16012736..16012760 (25 bp)
CTGGGAGGTGCTGGCTACTACGACA
LOC_Os08g26520
Os.50824.1.S1_x_at--988--9893Chr08:15692483..15692682 (25 bp)
TACTACGACAAGCAGCCAAGCAAGG
NONE
Os.50824.1.S1_x_at--373--1333Chr08:16012547..16012571 (25 bp)
AGAGGTATCCGTCACTCAAGGGCTG
LOC_Os08g26520
Os.50824.1.S1_x_at--985--8812Chr11:3573320..3573342 (22 bp)
TGTTGTTGTGAATCTTTCTGTAAAC
NONE
Os.50824.1.S1_x_at--385--6011Chr08:16012373..16012397 (25 bp)
GAGAGCAGCAACTTACCTAGATATG
NONE
Os.50824.1.S1_x_at--923--6271Chr08:16012303..16012327 (25 bp)
GATGTATTACTGATCGGTTAGTGAT
NONE
Target Sequence 
GTCGTACGGATCAGGATTCATAACTCTGTGCCTCCCCAGCAGGGAACAACATTCTATGGATCTTATGGAGGAAATAACTC
GCAATCAACAGCTTCATCGTACCACAATGGATCATCGAAAAGCACCACAGGAAGAGTGCCTGCGCAGCAATATTCAGATT
ACAAGTCCAAGACTGCAGACCAGTTCTCCTACTACTATAACAGCATAAGCAGCGGCCAAGGCCAGCAGCTGGGAGGTGCT
GGCTACTACGACAAGCAGCCAAGCAAGGGCACGACTAAGAGGTATCCGTCACTCAAGGGCTGATCTTAACTGATTTGGCA
GTGCTTGATGCATGATCGATGAAGAATAATCAACAGATTGCATATACTCATACAAGCACCGTATATACAAATAGTCATAT
TGAGAGAGGAAGTCTGTGTGTTGTTGTGAATCTTTCTGTAAACACATGTTTGAGAGCAGCAACTTACCTAGATATGTAGG
GTTGTTTAATTTCTTCATGTGGTTCATTAGCCATTAAATAAGATGTATTACTGATCGGTTAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis