Browse Element(s) Details


OsAffx.17176.2.S1_s_at

Description tigr:9636.m02622
TID=OsAffx.17176.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2656011/11Dirigent-like protein
LOC_Os08g2611011/11Dirigent-like protein
LOC_Os08g2660011/11hypothetical protein
LOC_Os08g2618011/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein
LOC_Os08g26544OsAffx.17173.1.S1_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26544OsAffx.17174.1.S1_x_at11/118+16025275..16028158hypothetical protein
LOC_Os08g26560OsAffx.17176.2.S1_s_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.1.S1_at11/118+16034224..16035198Dirigent-like protein
LOC_Os08g26560OsAffx.17176.2.S1_at2/118+16034224..16035198Dirigent-like protein
LOC_Os08g26570OsAffx.29369.1.S1_at11/118+16036741..16038084hypothetical protein
LOC_Os08g26580Os.51235.1.S1_at3/118+16045302..16046772hypothetical protein
LOC_Os08g26590OsAffx.29370.1.S1_at10/118+16048104..16048937hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.2.S1_s_at11/118+16050772..16051729hypothetical protein
LOC_Os08g26600OsAffx.17176.1.S1_at4/118+16050772..16051729hypothetical protein
LOC_Os08g26610NANA8+16052168..16054006retrotransposon, putative, centromere-specific
LOC_Os08g26620Os.51235.1.S1_at3/118+16057841..16060718hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17176.2.S1_s_at--1028--8054Chr08:16050846..16050870 (25 bp)
GGAGACATCTATCCATGTCCATGCA
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--992--9034Chr08:16050910..16050934 (25 bp)
TGCACCAGTTCCCTGCTTTGCCAGG
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--1093--6594Chr08:16051050..16051074 (25 bp)
GTTGGACGTCTACAAGGCTTTCATC
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--326--9854Chr08:16051060..16051084 (25 bp)
TACAAGGCTTTCATCTCCAAGCTGG
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--908--1714Chr08:16051092..16051116 (25 bp)
ACCACCAGCTGGTACATGGCTCACA
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--870--3194Chr08:16051406..16051430 (25 bp)
CAATGGTCAGTGGTCCATTACGGGT
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--715--3574Chr08:16051421..16051445 (25 bp)
CATTACGGGTGGGACTGGAACATTT
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--724--5734Chr08:16051433..16051457 (25 bp)
GACTGGAACATTTGCTAGTGCGCAT
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--69--10074Chr08:16051448..16051472 (25 bp)
TAGTGCGCATGGAACTATCAAGTTT
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--516--10174Chr08:16051463..16051487 (25 bp)
TATCAAGTTTACGAATTCCCAGAGT
LOC_Os08g26600
OsAffx.17176.2.S1_s_at--492--1854Chr08:16051473..16051497 (25 bp)
ACGAATTCCCAGAGTAGCACTGCCA
LOC_Os08g26600
Target Sequence 
GGAGACATCTATCCATGTCCATGCAAGTGTTCCCAGGAGAATGGGACTAGCCTTCACATGCACTTGCACCAGTTCCCTGC
TTTGCCAGGGTCCAATGCAAATGAAAATGTTGTTGGACGTCTACAAGGCTTTCATCTCCAAGCTGGTCAAACCACCACCA
GCTGGTACATGGCTCACACCATGGTGTTCAGCGATGGCAGGGTCCACAATTGAGGTGTTTGGGCTCTTTGGTGTCAAGCC
CAATGGTCAGTGGTCCATTACGGGTGGGACTGGAACATTTGCTAGTGCGCATGGAACTATCAAGTTTACGAATTCCCAGA
GTAGCACTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17176.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis