Browse Element(s) Details


Os.51235.1.S1_at

Description gb:AK062305.1
DB_XREF= gi:32972323
TID=Os.51235.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A11, full insert sequence.
FL= gb:AK062305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2612010/11expressed protein
LOC_Os08g265803/11hypothetical protein
LOC_Os08g266203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26080OsAffx.28545.4.S1_s_at11/118+15731913..15732937hypothetical protein
LOC_Os08g26090Os.10827.1.S1_x_at9/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26090Os.46055.2.S1_x_at6/118+15733076..15736363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g26100Os.10263.1.S1_at2/118+15738761..15740929hypothetical protein
LOC_Os08g26110OsAffx.17176.1.S1_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26110OsAffx.17176.2.S1_s_at11/118+15742346..15743316Dirigent-like protein
LOC_Os08g26120Os.51235.1.S1_at10/118+15755439..15757017expressed protein
LOC_Os08g26129OsAffx.22135.1.S1_x_at1/118+15758365..15760030NA
LOC_Os08g26140NANA8+15770944..15772059hypothetical protein
LOC_Os08g26150OsAffx.28610.2.S1_x_at5/118+15778389..15778840hypothetical protein
LOC_Os08g26150OsAffx.28610.3.S1_at2/118+15778389..15778840hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51235.1.S1_at--965--8973Chr08:16046779..16046803 (25 bp)
TGAAGCTTTCTCCACAAGATCCTTG
NONE
Os.51235.1.S1_at--158--2812Chr08:16046764..16046788 (25 bp)
AAGATCCTTGCGAACAATGTCCAGT
NONE
Os.51235.1.S1_at--31--2894Chr08:16060038..16060059 (22 bp)
AAGGGACTTAGTAGCTCTGTGCCTC
LOC_Os08g26620
Os.51235.1.S1_at--518--2312Chr08:16046589..16046613 (25 bp)
AAAGGCACGCGGACATTCATCATGA
LOC_Os08g26580
Os.51235.1.S1_at--846--2851NONE
AAGTGACAAACCTTCCAGGATCGAA
NONE
Os.51235.1.S1_at--515--4353Chr08:16058156..16058180 (25 bp)
CCAGCAGCCCTACAATGGTCAAGGT
LOC_Os08g26620
Os.51235.1.S1_at--1073--812Chr08:16058142..16058166 (25 bp)
ATGGTCAAGGTGCTCACAGCCTCAC
LOC_Os08g26620
Os.51235.1.S1_at--493--3312Chr08:15967317..15967341 (25 bp)
CACAGCCTCACGTACGGGTTCAAAA
NONE
Os.51235.1.S1_at--644--3212Chr08:15967130..15967154 (25 bp)
CAAGGGCATGTCCAAATTGGTCGTA
NONE
Os.51235.1.S1_at--1141--9872Chr08:15755511..15755535 (25 bp)
TACTAATTCGTTGTTCAAACCTCTG
LOC_Os08g26120
Os.51235.1.S1_at--25--10331Chr08:15755443..15755467 (25 bp)
TTATTGTAAATAGCCGTCCACCTCC
LOC_Os08g26120
Target Sequence 
TGAAGCTTTCTCCACAAGATCCTTGCGAACAATGTCCAGTTCTAAGGGACTTAGTAGCTCTGTGCCTCCCCAAGGTGGCT
CTGGAGCATCCAAAAGGCACGCGGACATTCATCATGAAGTGACAAACCTTCCAGGATCGAAAGGTTTTACACCTTCTCGG
AACAACAACCAGCAGCCCTACAATGGTCAAGGTGCTCACAGCCTCACGTACGGGTTCAAAACATTTGCCACAAAAGCAAG
GGCATGTCCAAATTGGTCGTATAAGCCATGAACCAAAATGAGCAGGGATTATCAATACTAATTCGTTGTTCAAACCTCTG
TGAAAATTACAATGTACATATATATATGTATATAGGGAAAGGATTATTGTAAATAGCCGTCCACCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis